Literature DB >> 34516789

Regulation of biomolecular condensates by interfacial protein clusters.

Andrew W Folkmann1,2, Andrea Putnam1,2, Chiu Fan Lee3, Geraldine Seydoux1,2.   

Abstract

Biomolecular condensates are cellular compartments that can form by phase separation in the absence of limiting membranes. Studying the P granules of Caenorhabditis elegans, we find that condensate dynamics are regulated by protein clusters that adsorb to the condensate interface. Using in vitro reconstitution, live observations, and theory, we demonstrate that localized assembly of P granules is controlled by MEG-3, an intrinsically disordered protein that forms low dynamic assemblies on P granules. Following classic Pickering emulsion theory, MEG-3 clusters lower surface tension and slow down coarsening. During zygote polarization, MEG-3 recruits the DYRK family kinase MBK-2 to accelerate spatially regulated growth of the P granule emulsion. By tuning condensate-cytoplasm exchange, interfacial clusters regulate the structural integrity of biomolecular condensates, reminiscent of the role of lipid bilayers in membrane-bound organelles.

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Year:  2021        PMID: 34516789      PMCID: PMC8627561          DOI: 10.1126/science.abg7071

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  42 in total

1.  Spatial organization of the cell cytoplasm by position-dependent phase separation.

Authors:  Chiu Fan Lee; Clifford P Brangwynne; Jöbin Gharakhani; Anthony A Hyman; Frank Jülicher
Journal:  Phys Rev Lett       Date:  2013-08-20       Impact factor: 9.161

Review 2.  Pickering emulsions for food applications: background, trends, and challenges.

Authors:  Claire C Berton-Carabin; Karin Schroën
Journal:  Annu Rev Food Sci Technol       Date:  2015-02-20

Review 3.  Disorder in milk proteins: caseins, intrinsically disordered colloids.

Authors:  Elrashdy M Redwan; Bin Xue; Hussein A Almehdar; Vladimir N Uversky
Journal:  Curr Protein Pept Sci       Date:  2015       Impact factor: 3.272

4.  Kinase-controlled phase transition of membraneless organelles in mitosis.

Authors:  Arpan Kumar Rai; Jia-Xuan Chen; Matthias Selbach; Lucas Pelkmans
Journal:  Nature       Date:  2018-07-04       Impact factor: 49.962

Review 5.  Liquid-liquid phase separation in biology.

Authors:  Anthony A Hyman; Christoph A Weber; Frank Jülicher
Journal:  Annu Rev Cell Dev Biol       Date:  2014       Impact factor: 13.827

6.  Endoplasmic reticulum contact sites regulate the dynamics of membraneless organelles.

Authors:  Jason E Lee; Peter I Cathey; Haoxi Wu; Roy Parker; Gia K Voeltz
Journal:  Science       Date:  2020-01-31       Impact factor: 47.728

Review 7.  Protein Phase Separation: A New Phase in Cell Biology.

Authors:  Steven Boeynaems; Simon Alberti; Nicolas L Fawzi; Tanja Mittag; Magdalini Polymenidou; Frederic Rousseau; Joost Schymkowitz; James Shorter; Benjamin Wolozin; Ludo Van Den Bosch; Peter Tompa; Monika Fuxreiter
Journal:  Trends Cell Biol       Date:  2018-03-27       Impact factor: 20.808

8.  Single-molecule dynamics of the P granule scaffold MEG-3 in the Caenorhabditis elegans zygote.

Authors:  Youjun Wu; Bingjie Han; Timothy J Gauvin; Jarrett Smith; Abhyudai Singh; Erik E Griffin
Journal:  Mol Biol Cell       Date:  2018-12-12       Impact factor: 4.138

9.  Regulation of RNA granule dynamics by phosphorylation of serine-rich, intrinsically disordered proteins in C. elegans.

Authors:  Jennifer T Wang; Jarrett Smith; Bi-Chang Chen; Helen Schmidt; Dominique Rasoloson; Alexandre Paix; Bramwell G Lambrus; Deepika Calidas; Eric Betzig; Geraldine Seydoux
Journal:  Elife       Date:  2014-12-23       Impact factor: 8.140

10.  Distinct stages in stress granule assembly and disassembly.

Authors:  Joshua R Wheeler; Tyler Matheny; Saumya Jain; Robert Abrisch; Roy Parker
Journal:  Elife       Date:  2016-09-07       Impact factor: 8.140

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  24 in total

Review 1.  Conformational Freedom and Topological Confinement of Proteins in Biomolecular Condensates.

Authors:  Daniel Scholl; Ashok A Deniz
Journal:  J Mol Biol       Date:  2021-11-09       Impact factor: 5.469

2.  The relative binding position of Nck and Grb2 adaptors impacts actin-based motility of Vaccinia virus.

Authors:  Angika Basant; Michael Way
Journal:  Elife       Date:  2022-07-07       Impact factor: 8.713

3.  The transcriptional coactivator RUVBL2 regulates Pol II clustering with diverse transcription factors.

Authors:  Hui Wang; Boyuan Li; Linyu Zuo; Bo Wang; Yan Yan; Kai Tian; Rong Zhou; Chenlu Wang; Xizi Chen; Yongpeng Jiang; Haonan Zheng; Fangfei Qin; Bin Zhang; Yang Yu; Chao-Pei Liu; Yanhui Xu; Juntao Gao; Zhi Qi; Wulan Deng; Xiong Ji
Journal:  Nat Commun       Date:  2022-09-28       Impact factor: 17.694

Review 4.  Protein conformation and biomolecular condensates.

Authors:  Diego S Vazquez; Pamela L Toledo; Alejo R Gianotti; Mario R Ermácora
Journal:  Curr Res Struct Biol       Date:  2022-09-14

Review 5.  A conceptual framework for understanding phase separation and addressing open questions and challenges.

Authors:  Tanja Mittag; Rohit V Pappu
Journal:  Mol Cell       Date:  2022-06-07       Impact factor: 19.328

Review 6.  Capillary forces generated by biomolecular condensates.

Authors:  Bernardo Gouveia; Yoonji Kim; Joshua W Shaevitz; Sabine Petry; Howard A Stone; Clifford P Brangwynne
Journal:  Nature       Date:  2022-09-07       Impact factor: 69.504

Review 7.  It's Just a Phase: Exploring the Relationship Between mRNA, Biomolecular Condensates, and Translational Control.

Authors:  Dylan M Parker; Lindsay P Winkenbach; Erin Osborne Nishimura
Journal:  Front Genet       Date:  2022-06-27       Impact factor: 4.772

8.  Computational modeling offers new insight into Drosophila germ granule development.

Authors:  Michael Valentino; Bianca M Ortega; Bianca Ulrich; Dominique A Doyle; Edward D Farnum; David A Joiner; Elizabeth R Gavis; Matthew G Niepielko
Journal:  Biophys J       Date:  2022-03-12       Impact factor: 3.699

9.  Amphiphilic proteins coassemble into multiphasic condensates and act as biomolecular surfactants.

Authors:  Fleurie M Kelley; Bruna Favetta; Roshan Mammen Regy; Jeetain Mittal; Benjamin S Schuster
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-21       Impact factor: 12.779

10.  RNA at the surface of phase-separated condensates impacts their size and number.

Authors:  Audrey Cochard; Marina Garcia-Jove Navarro; Leonard Piroska; Shunnichi Kashida; Michel Kress; Dominique Weil; Zoher Gueroui
Journal:  Biophys J       Date:  2022-03-29       Impact factor: 3.699

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