Literature DB >> 29602697

Protein Phase Separation: A New Phase in Cell Biology.

Steven Boeynaems1, Simon Alberti2, Nicolas L Fawzi3, Tanja Mittag4, Magdalini Polymenidou5, Frederic Rousseau6, Joost Schymkowitz6, James Shorter7, Benjamin Wolozin8, Ludo Van Den Bosch9, Peter Tompa10, Monika Fuxreiter11.   

Abstract

Cellular compartments and organelles organize biological matter. Most well-known organelles are separated by a membrane boundary from their surrounding milieu. There are also many so-called membraneless organelles and recent studies suggest that these organelles, which are supramolecular assemblies of proteins and RNA molecules, form via protein phase separation. Recent discoveries have shed light on the molecular properties, formation, regulation, and function of membraneless organelles. A combination of techniques from cell biology, biophysics, physical chemistry, structural biology, and bioinformatics are starting to help establish the molecular principles of an emerging field, thus paving the way for exciting discoveries, including novel therapeutic approaches for the treatment of age-related disorders.
Copyright © 2018. Published by Elsevier Ltd.

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Year:  2018        PMID: 29602697      PMCID: PMC6034118          DOI: 10.1016/j.tcb.2018.02.004

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  148 in total

1.  Stress granule assembly is mediated by prion-like aggregation of TIA-1.

Authors:  Natalie Gilks; Nancy Kedersha; Maranatha Ayodele; Lily Shen; Georg Stoecklin; Laura M Dember; Paul Anderson
Journal:  Mol Biol Cell       Date:  2004-09-15       Impact factor: 4.138

2.  Binary-liquid phase separation of lens protein solutions.

Authors:  M L Broide; C R Berland; J Pande; O O Ogun; G B Benedek
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

3.  Phase Transition in Postsynaptic Densities Underlies Formation of Synaptic Complexes and Synaptic Plasticity.

Authors:  Menglong Zeng; Yuan Shang; Yoichi Araki; Tingfeng Guo; Richard L Huganir; Mingjie Zhang
Journal:  Cell       Date:  2016-08-25       Impact factor: 41.582

4.  Cajal bodies, nucleoli, and speckles in the Xenopus oocyte nucleus have a low-density, sponge-like structure.

Authors:  Korie E Handwerger; Jason A Cordero; Joseph G Gall
Journal:  Mol Biol Cell       Date:  2004-10-27       Impact factor: 4.138

Review 5.  Autophagy and aging.

Authors:  David C Rubinsztein; Guillermo Mariño; Guido Kroemer
Journal:  Cell       Date:  2011-09-02       Impact factor: 41.582

6.  ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain.

Authors:  Alexander E Conicella; Gül H Zerze; Jeetain Mittal; Nicolas L Fawzi
Journal:  Structure       Date:  2016-08-18       Impact factor: 5.006

Review 7.  Regulation of stress granules in virus systems.

Authors:  James P White; Richard E Lloyd
Journal:  Trends Microbiol       Date:  2012-03-07       Impact factor: 17.079

Review 8.  Repeat-associated non-ATG (RAN) translation in neurological disease.

Authors:  John D Cleary; Laura P W Ranum
Journal:  Hum Mol Genet       Date:  2013-08-04       Impact factor: 6.150

9.  ALS/FTD Mutation-Induced Phase Transition of FUS Liquid Droplets and Reversible Hydrogels into Irreversible Hydrogels Impairs RNP Granule Function.

Authors:  Tetsuro Murakami; Seema Qamar; Julie Qiaojin Lin; Gabriele S Kaminski Schierle; Eric Rees; Akinori Miyashita; Ana R Costa; Roger B Dodd; Fiona T S Chan; Claire H Michel; Deborah Kronenberg-Versteeg; Yi Li; Seung-Pil Yang; Yosuke Wakutani; William Meadows; Rodylyn Rose Ferry; Liang Dong; Gian Gaetano Tartaglia; Giorgio Favrin; Wen-Lang Lin; Dennis W Dickson; Mei Zhen; David Ron; Gerold Schmitt-Ulms; Paul E Fraser; Neil A Shneider; Christine Holt; Michele Vendruscolo; Clemens F Kaminski; Peter St George-Hyslop
Journal:  Neuron       Date:  2015-10-29       Impact factor: 17.173

10.  Autophagy induction enhances TDP43 turnover and survival in neuronal ALS models.

Authors:  Sami J Barmada; Andrea Serio; Arpana Arjun; Bilada Bilican; Aaron Daub; D Michael Ando; Andrey Tsvetkov; Michael Pleiss; Xingli Li; Daniel Peisach; Christopher Shaw; Siddharthan Chandran; Steven Finkbeiner
Journal:  Nat Chem Biol       Date:  2014-06-29       Impact factor: 15.040

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  437 in total

1.  Nuclear condensates of the Polycomb protein chromobox 2 (CBX2) assemble through phase separation.

Authors:  Roubina Tatavosian; Samantha Kent; Kyle Brown; Tingting Yao; Huy Nguyen Duc; Thao Ngoc Huynh; Chao Yu Zhen; Brian Ma; Haobin Wang; Xiaojun Ren
Journal:  J Biol Chem       Date:  2018-12-04       Impact factor: 5.157

2.  Defining the RNA interactome by total RNA-associated protein purification.

Authors:  Vadim Shchepachev; Stefan Bresson; Christos Spanos; Elisabeth Petfalski; Lutz Fischer; Juri Rappsilber; David Tollervey
Journal:  Mol Syst Biol       Date:  2019-04-08       Impact factor: 11.429

3.  Tug of War between Condensate Phases in a Minimal Macromolecular System.

Authors:  Archishman Ghosh; Xiaojia Zhang; Huan-Xiang Zhou
Journal:  J Am Chem Soc       Date:  2020-05-04       Impact factor: 15.419

Review 4.  New pathologic mechanisms in nucleotide repeat expansion disorders.

Authors:  C M Rodriguez; P K Todd
Journal:  Neurobiol Dis       Date:  2019-06-21       Impact factor: 5.996

5.  A subcellular map of the human kinome.

Authors:  Haitao Zhang; Xiaolei Cao; Mei Tang; Guoxuan Zhong; Yuan Si; Haidong Li; Feifeng Zhu; Qinghua Liao; Liuju Li; Jianhui Zhao; Jia Feng; Shuaifeng Li; Chenliang Wang; Manuel Kaulich; Fangwei Wang; Liangyi Chen; Li Li; Zongping Xia; Tingbo Liang; Huasong Lu; Xin-Hua Feng; Bin Zhao
Journal:  Elife       Date:  2021-05-14       Impact factor: 8.140

Review 6.  Relation Between Stress Granules and Cytoplasmic Protein Aggregates Linked to Neurodegenerative Diseases.

Authors:  Ioana Dobra; Serhii Pankivskyi; Anastasiia Samsonova; David Pastre; Loic Hamon
Journal:  Curr Neurol Neurosci Rep       Date:  2018-11-08       Impact factor: 5.081

7.  Role of G-proteins and phosphorylation in the distribution of AGS3 to cell puncta.

Authors:  Ali Vural; Ersin Fadillioglu; Fatih Kelesoglu; Dzwokai Ma; Stephen M Lanier
Journal:  J Cell Sci       Date:  2018-12-05       Impact factor: 5.285

8.  Measles Virus Forms Inclusion Bodies with Properties of Liquid Organelles.

Authors:  Yuqin Zhou; Justin M Su; Charles E Samuel; Dzwokai Ma
Journal:  J Virol       Date:  2019-10-15       Impact factor: 5.103

9.  Inhibition of Axon Regeneration by Liquid-like TIAR-2 Granules.

Authors:  Matthew G Andrusiak; Panid Sharifnia; Xiaohui Lyu; Zhiping Wang; Andrea M Dickey; Zilu Wu; Andrew D Chisholm; Yishi Jin
Journal:  Neuron       Date:  2019-08-01       Impact factor: 17.173

10.  Instructed Assembly of Peptides for Intracellular Enzyme Sequestration.

Authors:  Zhaoqianqi Feng; Huaimin Wang; Bing Xu
Journal:  J Am Chem Soc       Date:  2018-11-21       Impact factor: 15.419

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