Literature DB >> 34916288

Amphiphilic proteins coassemble into multiphasic condensates and act as biomolecular surfactants.

Fleurie M Kelley1, Bruna Favetta2, Roshan Mammen Regy3, Jeetain Mittal3, Benjamin S Schuster4.   

Abstract

Cells contain membraneless compartments that assemble due to liquid-liquid phase separation, including biomolecular condensates with complex morphologies. For instance, certain condensates are surrounded by a film of distinct composition, such as Ape1 condensates coated by a layer of Atg19, required for selective autophagy in yeast. Other condensates are multiphasic, with nested liquid phases of distinct compositions and functions, such as in the case of ribosome biogenesis in the nucleolus. The size and structure of such condensates must be regulated for proper biological function. We leveraged a bioinspired approach to discover how amphiphilic, surfactant-like proteins may contribute to the structure and size regulation of biomolecular condensates. We designed and examined families of amphiphilic proteins comprising one phase-separating domain and one non-phase-separating domain. In particular, these proteins contain the soluble structured domain glutathione S-transferase (GST) or maltose binding protein (MBP), fused to the intrinsically disordered RGG domain from P granule protein LAF-1. When one amphiphilic protein is mixed in vitro with RGG-RGG, the proteins assemble into enveloped condensates, with RGG-RGG at the core and the amphiphilic protein forming the surface film layer. Importantly, we found that MBP-based amphiphiles are surfactants and influence droplet size, with increasing surfactant concentration resulting in smaller droplet radii. In contrast, GST-based amphiphiles at increased concentrations coassemble with RGG-RGG into multiphasic structures. We propose a mechanism for these experimental observations, supported by molecular simulations of a minimalist model. We speculate that surfactant proteins may play a significant role in regulating the structure and function of biomolecular condensates.

Entities:  

Keywords:  intrinsically disordered proteins; liquid–liquid phase separation; molecular simulations; size regulation; surfactants

Mesh:

Substances:

Year:  2021        PMID: 34916288      PMCID: PMC8713756          DOI: 10.1073/pnas.2109967118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  74 in total

1.  Mutations that alter the equilibrium between open and closed conformations of Escherichia coli maltose-binding protein impede its ability to enhance the solubility of passenger proteins.

Authors:  Sreedevi Nallamsetty; David S Waugh
Journal:  Biochem Biophys Res Commun       Date:  2007-10-22       Impact factor: 3.575

2.  Liquid-liquid phase separation in artificial cells.

Authors:  Charles D Crowe; Christine D Keating
Journal:  Interface Focus       Date:  2018-08-17       Impact factor: 3.906

3.  Protein assembly at the air-water interface studied by fluorescence microscopy.

Authors:  Zhengzheng Liao; Joshua W Lampe; Portonovo S Ayyaswamy; David M Eckmann; Ivan J Dmochowski
Journal:  Langmuir       Date:  2011-10-03       Impact factor: 3.882

4.  Identifying sequence perturbations to an intrinsically disordered protein that determine its phase-separation behavior.

Authors:  Benjamin S Schuster; Gregory L Dignon; Wai Shing Tang; Fleurie M Kelley; Aishwarya Kanchi Ranganath; Craig N Jahnke; Alison G Simpkins; Roshan Mammen Regy; Daniel A Hammer; Matthew C Good; Jeetain Mittal
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-11       Impact factor: 11.205

Review 5.  Principles and Applications of Biological Membrane Organization.

Authors:  Wade F Zeno; Kasey J Day; Vernita D Gordon; Jeanne C Stachowiak
Journal:  Annu Rev Biophys       Date:  2020-01-08       Impact factor: 12.981

6.  Optochemical Control of Protein Localization and Activity within Cell-like Compartments.

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Journal:  Biochemistry       Date:  2018-04-19       Impact factor: 3.162

7.  Crystal structures of a schistosomal drug and vaccine target: glutathione S-transferase from Schistosoma japonica and its complex with the leading antischistosomal drug praziquantel.

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Journal:  J Mol Biol       Date:  1995-02-10       Impact factor: 5.469

8.  Coexisting Liquid Phases Underlie Nucleolar Subcompartments.

Authors:  Marina Feric; Nilesh Vaidya; Tyler S Harmon; Diana M Mitrea; Lian Zhu; Tiffany M Richardson; Richard W Kriwacki; Rohit V Pappu; Clifford P Brangwynne
Journal:  Cell       Date:  2016-05-19       Impact factor: 41.582

9.  Complex microparticle architectures from stimuli-responsive intrinsically disordered proteins.

Authors:  Stefan Roberts; Vincent Miao; Simone Costa; Joseph Simon; Garrett Kelly; Tejank Shah; Stefan Zauscher; Ashutosh Chilkoti
Journal:  Nat Commun       Date:  2020-03-12       Impact factor: 14.919

10.  Sequence-encoded and composition-dependent protein-RNA interactions control multiphasic condensate morphologies.

Authors:  Muralikrishna Raju; Ibraheem Alshareedah; Taranpreet Kaur; Richoo B Davis; Davit A Potoyan; Priya R Banerjee
Journal:  Nat Commun       Date:  2021-02-08       Impact factor: 14.919

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  5 in total

Review 1.  Protein conformation and biomolecular condensates.

Authors:  Diego S Vazquez; Pamela L Toledo; Alejo R Gianotti; Mario R Ermácora
Journal:  Curr Res Struct Biol       Date:  2022-09-14

Review 2.  Capillary forces generated by biomolecular condensates.

Authors:  Bernardo Gouveia; Yoonji Kim; Joshua W Shaevitz; Sabine Petry; Howard A Stone; Clifford P Brangwynne
Journal:  Nature       Date:  2022-09-07       Impact factor: 69.504

3.  Incorporation and Assembly of a Light-Emitting Enzymatic Reaction into Model Protein Condensates.

Authors:  Muyang Guan; Mikael V Garabedian; Marcel Leutenegger; Benjamin S Schuster; Matthew C Good; Daniel A Hammer
Journal:  Biochemistry       Date:  2021-10-14       Impact factor: 3.321

4.  Multivalent interactions between molecular components involved in fast endophilin mediated endocytosis drive protein phase separation.

Authors:  Samsuzzoha Mondal; Karthik Narayan; Samuel Botterbusch; Imania Powers; Jason Zheng; Honey Priya James; Rui Jin; Tobias Baumgart
Journal:  Nat Commun       Date:  2022-08-26       Impact factor: 17.694

5.  Size conservation emerges spontaneously in biomolecular condensates formed by scaffolds and surfactant clients.

Authors:  Ignacio Sanchez-Burgos; Jerelle A Joseph; Rosana Collepardo-Guevara; Jorge R Espinosa
Journal:  Sci Rep       Date:  2021-07-27       Impact factor: 4.379

  5 in total

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