Literature DB >> 34767801

Conformational Freedom and Topological Confinement of Proteins in Biomolecular Condensates.

Daniel Scholl1, Ashok A Deniz2.   

Abstract

The emergence of biomolecular condensation and liquid-liquid phase separation (LLPS) introduces a new layer of complexity into our understanding of cell and molecular biology. Evidence steadily grows indicating that condensates are not only implicated in physiology but also human disease. Macro- and mesoscale characterization of condensates as a whole have been instrumental in understanding their biological functions and dysfunctions. By contrast, the molecular level characterization of condensates and how condensates modify the properties of the molecules that constitute them thus far remain comparably scarce. In this minireview we summarize and discuss the findings of several recent studies that have focused on structure, dynamics, and interactions of proteins undergoing condensation. The mechanistic insights they provide help us identify the relevant properties nature and scientists can leverage to modulate the behavior of condensate systems. We also discuss the unique environment of the droplet surface and speculate on effects of topological constraints and physical exclusion on condensate properties.
Copyright © 2021 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  biomolecular condensates; disordered proteins; phase separation; protein dynamics; topology

Mesh:

Substances:

Year:  2021        PMID: 34767801      PMCID: PMC8748313          DOI: 10.1016/j.jmb.2021.167348

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  55 in total

1.  Isolation of the kinetoplast DNA of Leishmania tarentolae in the form of a network.

Authors:  L Simpson; J Berliner
Journal:  J Protozool       Date:  1974-05

Review 2.  Head-to-Tail Polymerization in the Assembly of Biomolecular Condensates.

Authors:  Mariann Bienz
Journal:  Cell       Date:  2020-08-20       Impact factor: 41.582

Review 3.  Mechanically Interlocked Molecules (MIMs)-Molecular Shuttles, Switches, and Machines (Nobel Lecture).

Authors:  J Fraser Stoddart
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-16       Impact factor: 15.336

4.  Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions.

Authors:  Jeong-Mo Choi; Alex S Holehouse; Rohit V Pappu
Journal:  Annu Rev Biophys       Date:  2020-01-31       Impact factor: 12.981

Review 5.  Biomolecular condensates at the nexus of cellular stress, protein aggregation disease and ageing.

Authors:  Simon Alberti; Anthony A Hyman
Journal:  Nat Rev Mol Cell Biol       Date:  2021-01-28       Impact factor: 94.444

Review 6.  Single-molecule fluorescence studies of intrinsically disordered proteins and liquid phase separation.

Authors:  Irem Nasir; Paulo L Onuchic; Sergio R Labra; Ashok A Deniz
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2019-05-02       Impact factor: 3.036

7.  RNA-Mediated Feedback Control of Transcriptional Condensates.

Authors:  Jonathan E Henninger; Ozgur Oksuz; Krishna Shrinivas; Ido Sagi; Gary LeRoy; Ming M Zheng; J Owen Andrews; Alicia V Zamudio; Charalampos Lazaris; Nancy M Hannett; Tong Ihn Lee; Phillip A Sharp; Ibrahim I Cissé; Arup K Chakraborty; Richard A Young
Journal:  Cell       Date:  2020-12-16       Impact factor: 41.582

8.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

9.  A gel phase promotes condensation of liquid P granules in Caenorhabditis elegans embryos.

Authors:  Andrea Putnam; Madeline Cassani; Jarrett Smith; Geraldine Seydoux
Journal:  Nat Struct Mol Biol       Date:  2019-03-04       Impact factor: 15.369

10.  Mechanical unfolding of a knotted protein unveils the kinetic and thermodynamic consequences of threading a polypeptide chain.

Authors:  Maira Rivera; Yuxin Hao; Rodrigo A Maillard; Mauricio Baez
Journal:  Sci Rep       Date:  2020-06-12       Impact factor: 4.379

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