| Literature DB >> 34415288 |
Giedre Ratkeviciute1, Benjamin F Cooper1, Timothy J Knowles1.
Abstract
The solubilisation of membrane proteins (MPs) necessitates the overlap of two contradictory events; the extraction of MPs from their native lipid membranes and their subsequent stabilisation in aqueous environments. Whilst the current myriad of membrane mimetic systems provide a range of modus operandi, there are no golden rules for selecting the optimal pipeline for solubilisation of a specific MP hence a miscellaneous approach must be employed balancing both solubilisation efficiency and protein stability. In recent years, numerous diverse lipid membrane mimetic systems have been developed, expanding the pool of available solubilisation strategies. This review provides an overview of recent developments in the membrane mimetic field, with particular emphasis placed upon detergents, polymer-based nanodiscs and amphipols, highlighting the latest reagents to enter the toolbox of MP research.Entities:
Keywords: membrane protein solubilisation; membrane proteins; membrane solubilisation; smalp
Mesh:
Substances:
Year: 2021 PMID: 34415288 PMCID: PMC8421053 DOI: 10.1042/BST20210181
Source DB: PubMed Journal: Biochem Soc Trans ISSN: 0300-5127 Impact factor: 5.407
Figure 1.Schematic displaying the extraction of MPs into the three membrane mimetic systems discussed in detail in this review.
Left — detergent solubilisation forms a micelle around the hydrophobic region of the MP (purple), middle — solubilisation with a nanodisc forming amphipathic polymer (blue) retains the native membrane lipids (yellow) around the MP, right — amphipols (APols) (blue) self-assemble to mask hydrophobic MP regions from the aqueous environment. Figure created with BioRender.com.
Figure 2.Structures of a selection of detergents referred to within this manuscript.
Upper and lower panels depict conventional and novel detergents respectively highlighting the variability within each class and allowing comparison between their architectures.
Figure 3.Schematic representation of MP incorporation into MSP and polymer nanodiscs.
(Left) MSP nanodisc solubilisation — MP is initially extracted into detergent micelles to which lipid and MSP are added before detergent removal triggers nanodisc formation. (Right) Amphipathic polymer nanodisc solubilisation — addition of amphipathic polymer to the membrane fraction results in the spontaneous formation of nanodiscs encapsulating the native lipid and protein. Figure created with BioRender.com.
Structure of the amphipathic copolymers discussed in this review along with their respective advantages and disadvantages
| Polymer | Advantages | Disadvantages |
|---|---|---|
| SMA | Effective solubilisation of a wide range of MPs | Precipitation at acidic pH (<6.5) |
| SMA-ED | Stability over a greater pH range (pH < 5 and pH > 7) | Instability between pH 5–7 |
| SMAd-A | Stability under acidic pH (pH < 6) | Absorption of UV light (styrene Pmoiety) |
| SMA-QA | Stable over all biologically relevant pH values (2.5 < pH < 10) | Absorption of UV light (styrene moiety) |
| SMA-EA | Stable under acidic pH values up to pH ∼3.3 | Absorption of UV light (styrene moiety) |
| SMI | Stable over a greater pH range (pH < 7.8) | Instability at pH > 7.8 |
| SMA-SH | Reactive sulfhydryl group allowing conjugation to thiol-reactive compounds | Precipitation at acidic pH (<6.5) |
| zSMA | Remains soluble at acidic pH values (down to ∼pH 4) | Absorption of UV light (styrene moiety) |
| DIBMA | Suitable for UV spectroscopic studies (no styrene moiety) | Precipitation at acidic pH values |
| PMA | Suitable for UV spectroscopic studies (no styrene moiety) | MP solubilisation attributes largely unexplored |
| Alkyl-PAAs | Ability to modulate nanodisc size including formation of macro-nanodiscs | Sensitivity to acidic pH and divalent cations |
| AASTY | Increased extraction efficacy | Absorption of UV light (styrene moiety) |
Structures created with ACD/Labs Chemsketch.