Literature DB >> 29171274

Spontaneous Lipid Nanodisc Fomation by Amphiphilic Polymethacrylate Copolymers.

Kazuma Yasuhara1, Jin Arakida1, Thirupathi Ravula2, Sudheer Kumar Ramadugu2, Bikash Sahoo2, Jun-Ichi Kikuchi1, Ayyalusamy Ramamoorthy2.   

Abstract

There is a growing interest in the use of lipid bilayer nanodiscs for various biochemical and biomedical applications. Among the different types of nanodiscs, the unique features of synthetic polymer-based nanodiscs have attracted additional interest. A styrene-maleic acid (SMA) copolymer demonstrated to form lipid nanodiscs has been used for structural biology related studies on membrane proteins. However, the application of SMA polymer based lipid nanodiscs is limited because of the strong absorption of the aromatic group interfering with various experimental measurements. Thus, there is considerable interest in the development of other molecular frameworks for the formation of polymer-based lipid nanodiscs. In this study, we report the first synthesis and characterization of a library of polymethacrylate random copolymers as alternatives to SMA polymer. In addition, we experimentally demonstrate the ability of these polymers to form lipid bilayer nanodiscs through the fragmentation of lipid vesicles by means of light scattering, electron microscopy, differential scanning calorimetry, and solution and solid-state NMR experiments. We further demonstrate a unique application of the newly developed polymer for kinetics and structural characterization of the aggregation of human islet amyloid polypeptide (also known as amylin) within the lipid bilayer of the polymer nanodiscs using thioflavin-T-based fluorescence and circular dichroism experiments. Our results demonstrate that the reported new styrene-free polymers can be used in high-throughput biophysical experiments. Therefore, we expect that the new polymer nanodiscs will be valuable in the structural studies of amyloid proteins and membrane proteins by various biophysical techniques.

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Year:  2017        PMID: 29171274      PMCID: PMC5826593          DOI: 10.1021/jacs.7b10591

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  39 in total

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Authors:  P G Frank; Y L Marcel
Journal:  J Lipid Res       Date:  2000-06       Impact factor: 5.922

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Authors:  Kazuma Yasuhara; Shohei Miki; Hajime Nakazono; Akio Ohta; Jun-ichi Kikuchi
Journal:  Chem Commun (Camb)       Date:  2011-03-15       Impact factor: 6.222

3.  Phosphatidylethanolamine enhances amyloid fiber-dependent membrane fragmentation.

Authors:  Michele F M Sciacca; Jeffrey R Brender; Dong-Kuk Lee; Ayyalusamy Ramamoorthy
Journal:  Biochemistry       Date:  2012-09-21       Impact factor: 3.162

4.  Reconstitution of the Cytb5-CytP450 Complex in Nanodiscs for Structural Studies using NMR Spectroscopy.

Authors:  Meng Zhang; Rui Huang; Rose Ackermann; Sang-Choul Im; Lucy Waskell; Anna Schwendeman; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-29       Impact factor: 15.336

5.  Detergent-free isolation, characterization, and functional reconstitution of a tetrameric K+ channel: the power of native nanodiscs.

Authors:  Jonas M Dörr; Martijn C Koorengevel; Marre Schäfer; Alexander V Prokofyev; Stefan Scheidelaar; Elwin A W van der Cruijsen; Timothy R Dafforn; Marc Baldus; J Antoinette Killian
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-15       Impact factor: 11.205

6.  Atomic structures of IAPP (amylin) fusions suggest a mechanism for fibrillation and the role of insulin in the process.

Authors:  Jed J W Wiltzius; Stuart A Sievers; Michael R Sawaya; David Eisenberg
Journal:  Protein Sci       Date:  2009-07       Impact factor: 6.725

7.  A method for detergent-free isolation of membrane proteins in their local lipid environment.

Authors:  Sarah C Lee; Tim J Knowles; Vincent L G Postis; Mohammed Jamshad; Rosemary A Parslow; Yu-Pin Lin; Adrian Goldman; Pooja Sridhar; Michael Overduin; Stephen P Muench; Timothy R Dafforn
Journal:  Nat Protoc       Date:  2016-06-02       Impact factor: 13.491

8.  Recent Insight in Islet Amyloid Polypeptide Morphology, Structure, Membrane Interaction, and Toxicity in Type 2 Diabetes.

Authors:  Lucie Khemtemourian; Ehud Gazit; Andrew Miranker
Journal:  J Diabetes Res       Date:  2015-12-07       Impact factor: 4.011

Review 9.  Inhibition of IAPP Aggregation and Toxicity by Natural Products and Derivatives.

Authors:  Amit Pithadia; Jeffrey R Brender; Carol A Fierke; Ayyalusamy Ramamoorthy
Journal:  J Diabetes Res       Date:  2015-11-15       Impact factor: 4.011

Review 10.  The styrene-maleic acid copolymer: a versatile tool in membrane research.

Authors:  Jonas M Dörr; Stefan Scheidelaar; Martijn C Koorengevel; Juan J Dominguez; Marre Schäfer; Cornelis A van Walree; J Antoinette Killian
Journal:  Eur Biophys J       Date:  2015-12-06       Impact factor: 1.733

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1.  Nanodisc self-assembly is thermodynamically reversible and controllable.

Authors:  Tyler Camp; Stephen G Sligar
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Review 2.  Impact of membrane curvature on amyloid aggregation.

Authors:  Mayu S Terakawa; Yuxi Lin; Misaki Kinoshita; Shingo Kanemura; Dai Itoh; Toshihiko Sugiki; Masaki Okumura; Ayyalusamy Ramamoorthy; Young-Ho Lee
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-04-28       Impact factor: 3.747

3.  Effect of polymer charge on functional reconstitution of membrane proteins in polymer nanodiscs.

Authors:  Thirupathi Ravula; Nathaniel Z Hardin; Jia Bai; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Chem Commun (Camb)       Date:  2018-08-23       Impact factor: 6.222

Review 4.  Semen-derived amyloidogenic peptides-Key players of HIV infection.

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Journal:  Protein Sci       Date:  2018-03-14       Impact factor: 6.725

Review 5.  GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures.

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Journal:  Nat Rev Drug Discov       Date:  2018-11-09       Impact factor: 84.694

Review 6.  Solution NMR: A powerful tool for structural and functional studies of membrane proteins in reconstituted environments.

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Journal:  J Biol Chem       Date:  2019-09-24       Impact factor: 5.157

Review 7.  Use of paramagnetic systems to speed-up NMR data acquisition and for structural and dynamic studies.

Authors:  Vojč Kocman; Giacomo M Di Mauro; Gianluigi Veglia; Ayyalusamy Ramamoorthy
Journal:  Solid State Nucl Magn Reson       Date:  2019-07-12       Impact factor: 2.293

8.  Nanodisc-Forming Scaffold Protein Promoted Retardation of Amyloid-Beta Aggregation.

Authors:  Bikash Ranjan Sahoo; Takuya Genjo; Sarah J Cox; Andrea K Stoddard; G M Anantharamaiah; Carol Fierke; Ayyalusamy Ramamoorthy
Journal:  J Mol Biol       Date:  2018-08-28       Impact factor: 5.469

Review 9.  Membrane mimetic systems in CryoEM: keeping membrane proteins in their native environment.

Authors:  Henriette E Autzen; David Julius; Yifan Cheng
Journal:  Curr Opin Struct Biol       Date:  2019-07-03       Impact factor: 6.809

10.  Detergent-free extraction, reconstitution and characterization of membrane-anchored cytochrome-b5 in native lipids.

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Journal:  Chem Commun (Camb)       Date:  2020-05-28       Impact factor: 6.222

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