Literature DB >> 19903557

Chapter 11 - Reconstitution of membrane proteins in phospholipid bilayer nanodiscs.

T K Ritchie1, Y V Grinkova, T H Bayburt, I G Denisov, J K Zolnerciks, W M Atkins, S G Sligar.   

Abstract

Self-assembled phospholipid bilayer Nanodiscs have become an important and versatile tool among model membrane systems to functionally reconstitute membrane proteins. Nanodiscs consist of lipid domains encased within an engineered derivative of apolipoprotein A-1 scaffold proteins, which can be tailored to yield homogeneous preparations of disks with different diameters, and with epitope tags for exploitation in various purification strategies. A critical aspect of the self-assembly of target membranes into Nanodiscs lies in the optimization of the lipid:protein ratio. Here we describe strategies for performing this optimization and provide examples for reconstituting bacteriorhodopsin as a trimer, rhodopsin, and functionally active P-glycoprotein. Together, these demonstrate the versatility of Nanodisc technology for preparing monodisperse samples of membrane proteins of wide-ranging structure.

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Year:  2009        PMID: 19903557      PMCID: PMC4196316          DOI: 10.1016/S0076-6879(09)64011-8

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  63 in total

1.  Three-dimensional structure of P-glycoprotein: the transmembrane regions adopt an asymmetric configuration in the nucleotide-bound state.

Authors:  Mark F Rosenberg; Richard Callaghan; Szabolcs Modok; Christopher F Higgins; Robert C Ford
Journal:  J Biol Chem       Date:  2004-10-13       Impact factor: 5.157

2.  Assembly of single bacteriorhodopsin trimers in bilayer nanodiscs.

Authors:  Timothy H Bayburt; Yelena V Grinkova; Stephen G Sligar
Journal:  Arch Biochem Biophys       Date:  2006-03-29       Impact factor: 4.013

3.  Structural analysis of nanoscale self-assembled discoidal lipid bilayers by solid-state NMR spectroscopy.

Authors:  Ying Li; Aleksandra Z Kijac; Stephen G Sligar; Chad M Rienstra
Journal:  Biophys J       Date:  2006-08-11       Impact factor: 4.033

4.  Nanodiscs separate chemoreceptor oligomeric states and reveal their signaling properties.

Authors:  Thomas Boldog; Stephen Grimme; Mingshan Li; Stephen G Sligar; Gerald L Hazelbauer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-24       Impact factor: 11.205

Review 5.  P-glycoprotein and 'lipid rafts': some ambiguous mutual relationships (floating on them, building them or meeting them by chance?).

Authors:  S Orlowski; S Martin; A Escargueil
Journal:  Cell Mol Life Sci       Date:  2006-05       Impact factor: 9.261

6.  Formation and properties of bacteriorhodopsin monomers in the non-ionic detergents octyl-beta-D-glucoside and Triton X-100.

Authors:  N A Dencher; M P Heyn
Journal:  FEBS Lett       Date:  1978-12-15       Impact factor: 4.124

7.  Do drug substrates enter the common drug-binding pocket of P-glycoprotein through "gates"?

Authors:  Tip W Loo; David M Clarke
Journal:  Biochem Biophys Res Commun       Date:  2005-04-08       Impact factor: 3.575

8.  The conserved tyrosine residues 401 and 1044 in ATP sites of human P-glycoprotein are critical for ATP binding and hydrolysis: evidence for a conserved subdomain, the A-loop in the ATP-binding cassette.

Authors:  In-Wha Kim; Xiang-Hong Peng; Zuben E Sauna; Peter C FitzGerald; Di Xia; Marianna Müller; Krishnamachary Nandigama; Suresh V Ambudkar
Journal:  Biochemistry       Date:  2006-06-20       Impact factor: 3.162

9.  The ferrous-dioxygen intermediate in human cytochrome P450 3A4. Substrate dependence of formation and decay kinetics.

Authors:  Ilia G Denisov; Yelena V Grinkova; Bradley J Baas; Stephen G Sligar
Journal:  J Biol Chem       Date:  2006-06-08       Impact factor: 5.157

10.  Functional reconstitution of Beta2-adrenergic receptors utilizing self-assembling Nanodisc technology.

Authors:  Andrew J Leitz; Timothy H Bayburt; Alexander N Barnakov; Barry A Springer; Stephen G Sligar
Journal:  Biotechniques       Date:  2006-05       Impact factor: 1.993

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  340 in total

1.  'q-Titration' of long-chain and short-chain lipids differentiates between structured and mobile residues of membrane proteins studied in bicelles by solution NMR spectroscopy.

Authors:  Woo Sung Son; Sang Ho Park; Henry J Nothnagel; George J Lu; Yan Wang; Hua Zhang; Gabriel A Cook; Stanley C Howell; Stanley J Opella
Journal:  J Magn Reson       Date:  2011-10-25       Impact factor: 2.229

Review 2.  Nanodiscs versus macrodiscs for NMR of membrane proteins.

Authors:  Sang Ho Park; Sabrina Berkamp; Gabriel A Cook; Michelle K Chan; Hector Viadiu; Stanley J Opella
Journal:  Biochemistry       Date:  2011-09-30       Impact factor: 3.162

3.  Conformational analysis of human ATP-binding cassette transporter ABCB1 in lipid nanodiscs and inhibition by the antibodies MRK16 and UIC2.

Authors:  Tasha K Ritchie; Hyewon Kwon; William M Atkins
Journal:  J Biol Chem       Date:  2011-09-21       Impact factor: 5.157

4.  Impact of linker and conjugation chemistry on antigen binding, Fc receptor binding and thermal stability of model antibody-drug conjugates.

Authors:  Mauro Acchione; Hyewon Kwon; Claudia M Jochheim; William M Atkins
Journal:  MAbs       Date:  2012-04-26       Impact factor: 5.857

5.  Two copies of the SecY channel and acidic lipids are necessary to activate the SecA translocation ATPase.

Authors:  Kush Dalal; Catherine S Chan; Stephen G Sligar; Franck Duong
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-29       Impact factor: 11.205

Review 6.  Structure elucidation of dimeric transmembrane domains of bitopic proteins.

Authors:  Eduard V Bocharov; Pavel E Volynsky; Konstantin V Pavlov; Roman G Efremov; Alexander S Arseniev
Journal:  Cell Adh Migr       Date:  2010-05-01       Impact factor: 3.405

7.  Structure of the human TRPM4 ion channel in a lipid nanodisc.

Authors:  Henriette E Autzen; Alexander G Myasnikov; Melody G Campbell; Daniel Asarnow; David Julius; Yifan Cheng
Journal:  Science       Date:  2017-12-07       Impact factor: 47.728

8.  Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR.

Authors:  Franz Hagn; Mahmoud L Nasr; Gerhard Wagner
Journal:  Nat Protoc       Date:  2017-12-07       Impact factor: 13.491

9.  Nanodisc scaffold peptide (NSPr) replaces detergent by reconstituting acyl-CoA:cholesterol acyltransferase 1 into peptidiscs.

Authors:  Bryan Neumann; Kevin Chao; Catherine C Y Chang; Ta-Yuan Chang
Journal:  Arch Biochem Biophys       Date:  2020-07-28       Impact factor: 4.013

10.  Molecular dynamics simulations of lipid nanodiscs.

Authors:  Mohsen Pourmousa; Richard W Pastor
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-05-03       Impact factor: 3.747

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