Literature DB >> 14695290

Molecular probes: what is the range of their interaction with the environment?

H Lesch1, J Schlichter, J Friedrich, J M Vanderkooi.   

Abstract

We performed pressure-tuning hole-burning experiments on a modified cytochrome c protein in a glycerol/buffer glass. The shift and the broadening of the holes were investigated for various frequencies within the inhomogeneous band. On the basis of a simple model, we were able to estimate the interaction range between chromophore and protein. It is approximately 4.5 A. The parameters that enter the model are the compressibility, the static mean-square displacement, the inhomogeneous width, and the average spectral shift per pressure. From this result and from our experiments on pressure-induced denaturing, we conclude that water molecules have to be brought very close to the chromophore during the denaturation process.

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Year:  2004        PMID: 14695290      PMCID: PMC1303813          DOI: 10.1016/S0006-3495(04)74124-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  13 in total

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Authors:  W E Moerner; M Orrit
Journal:  Science       Date:  1999-03-12       Impact factor: 47.728

2.  Stability diagram and unfolding of a modified cytochrome c: what happens in the transformation regime?

Authors:  Harald Lesch; Hans Stadlbauer; Josef Friedrich; Jane M Vanderkooi
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

3.  Probing protein electrostatics with a synthetic fluorescent amino acid.

Authors:  Bruce E Cohen; Tim B McAnaney; Eun Sun Park; Yuh Nung Jan; Steven G Boxer; Lily Yeh Jan
Journal:  Science       Date:  2002-05-31       Impact factor: 47.728

4.  Hole-burning spectroscopy and relaxation dynamics of amorphous solids at low temperatures.

Authors:  R Jankowiak; G J Small
Journal:  Science       Date:  1987-08-07       Impact factor: 47.728

Review 5.  Proteins in electric fields and pressure fields: basic aspects.

Authors:  M Köhler; J Friedrich; J Fidy
Journal:  Biochim Biophys Acta       Date:  1998-08-18

6.  The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins.

Authors:  G Hummer; S Garde; A E García; M E Paulaitis; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

7.  Low temperature X-ray investigation of structural distributions in myoglobin.

Authors:  F Parak; H Hartmann; K D Aumann; H Reuscher; G Rennekamp; H Bartunik; W Steigemann
Journal:  Eur Biophys J       Date:  1987       Impact factor: 1.733

8.  Red-edge-excitation fluorescence spectroscopy of single-tryptophan proteins.

Authors:  A P Demchenko
Journal:  Eur Biophys J       Date:  1988       Impact factor: 1.733

9.  Conformational deformation in deoxymyoglobin by hydrostatic pressure.

Authors:  T Yamato; J Higo; Y Seno; N Go
Journal:  Proteins       Date:  1993-08

10.  Labeling proteins via hole burning of their aromatic amino acids: pressure tuning spectroscopy of BPTI.

Authors:  Markus Stübner; Christoph Hecht; Josef Friedrich
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

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  4 in total

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Authors:  Christina Scharnagl; Maria Reif; Josef Friedrich
Journal:  Biophys J       Date:  2005-04-15       Impact factor: 4.033

2.  Pigment spectra and intermolecular interaction potentials in glasses and proteins.

Authors:  I Renge; R van Grondelle; J P Dekker
Journal:  Biophys J       Date:  2007-06-08       Impact factor: 4.033

3.  Theoretical study of the partial molar volume change associated with the pressure-induced structural transition of ubiquitin.

Authors:  Takashi Imai; Shusaku Ohyama; Andriy Kovalenko; Fumio Hirata
Journal:  Protein Sci       Date:  2007-07-27       Impact factor: 6.725

4.  Dissimilar flexibility of α and β subunits of human adult hemoglobin influences the protein dynamics and its alteration induced by allosteric effectors.

Authors:  Gusztáv Schay; András D Kaposi; László Smeller; Krisztián Szigeti; Judit Fidy; Levente Herenyi
Journal:  PLoS One       Date:  2018-03-27       Impact factor: 3.240

  4 in total

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