Literature DB >> 33661634

Biomolecular Condensates: Sequence Determinants of Phase Separation, Microstructural Organization, Enzymatic Activity, and Material Properties.

Benjamin S Schuster1, Roshan Mammen Regy2, Elliott M Dolan3,4, Aishwarya Kanchi Ranganath1, Nina Jovic2, Sagar D Khare3,4, Zheng Shi3, Jeetain Mittal2.   

Abstract

This perspective article highlights recent progress and emerging challenges in understanding the formation and function of membraneless organelles (MLOs). A long-term goal in the MLO field is to identify the sequence-encoded rules that dictate the formation of compositionally controlled biomolecular condensates, which cells utilize to perform a wide variety of functions. The molecular organization of the different components within a condensate can vary significantly, ranging from a homogeneous mixture to core-shell droplet structures. We provide many examples to highlight the richness of the observed behavior and potential research directions for improving our mechanistic understanding. The tunable environment within condensates can, in principle, alter enzymatic activity significantly. We examine recent examples where this was demonstrated, including applications in synthetic biology. An important question about MLOs is the role of liquid-like material properties in biological function. We discuss the need for improved quantitative characterization tools and the development of sequence-structure-dynamics relationships.

Entities:  

Mesh:

Year:  2021        PMID: 33661634      PMCID: PMC9127939          DOI: 10.1021/acs.jpcb.0c11606

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   3.466


  105 in total

Review 1.  Improving enzymes by using them in organic solvents.

Authors:  A M Klibanov
Journal:  Nature       Date:  2001-01-11       Impact factor: 49.962

2.  Partitioning of cancer therapeutics in nuclear condensates.

Authors:  Isaac A Klein; Ann Boija; Lena K Afeyan; Susana Wilson Hawken; Mengyang Fan; Alessandra Dall'Agnese; Ozgur Oksuz; Jonathan E Henninger; Krishna Shrinivas; Benjamin R Sabari; Ido Sagi; Victoria E Clark; Jesse M Platt; Mrityunjoy Kar; Patrick M McCall; Alicia V Zamudio; John C Manteiga; Eliot L Coffey; Charles H Li; Nancy M Hannett; Yang Eric Guo; Tim-Michael Decker; Tong Ihn Lee; Tinghu Zhang; Jing-Ke Weng; Dylan J Taatjes; Arup Chakraborty; Phillip A Sharp; Young Tae Chang; Anthony A Hyman; Nathanael S Gray; Richard A Young
Journal:  Science       Date:  2020-06-19       Impact factor: 47.728

3.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

4.  Nuclear-Import Receptors Reverse Aberrant Phase Transitions of RNA-Binding Proteins with Prion-like Domains.

Authors:  Lin Guo; Hong Joo Kim; Hejia Wang; John Monaghan; Fernande Freyermuth; Julie C Sung; Kevin O'Donovan; Charlotte M Fare; Zamia Diaz; Nikita Singh; Zi Chao Zhang; Maura Coughlin; Elizabeth A Sweeny; Morgan E DeSantis; Meredith E Jackrel; Christopher B Rodell; Jason A Burdick; Oliver D King; Aaron D Gitler; Clotilde Lagier-Tourenne; Udai Bhan Pandey; Yuh Min Chook; J Paul Taylor; James Shorter
Journal:  Cell       Date:  2018-04-19       Impact factor: 41.582

5.  ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain.

Authors:  Alexander E Conicella; Gül H Zerze; Jeetain Mittal; Nicolas L Fawzi
Journal:  Structure       Date:  2016-08-18       Impact factor: 5.006

Review 6.  Protein Phase Separation: A New Phase in Cell Biology.

Authors:  Steven Boeynaems; Simon Alberti; Nicolas L Fawzi; Tanja Mittag; Magdalini Polymenidou; Frederic Rousseau; Joost Schymkowitz; James Shorter; Benjamin Wolozin; Ludo Van Den Bosch; Peter Tompa; Monika Fuxreiter
Journal:  Trends Cell Biol       Date:  2018-03-27       Impact factor: 20.808

7.  Sequence determinants of protein phase behavior from a coarse-grained model.

Authors:  Gregory L Dignon; Wenwei Zheng; Young C Kim; Robert B Best; Jeetain Mittal
Journal:  PLoS Comput Biol       Date:  2018-01-24       Impact factor: 4.475

8.  Multivalent interactions between CsoS2 and Rubisco mediate α-carboxysome formation.

Authors:  Luke M Oltrogge; Thawatchai Chaijarasphong; Allen W Chen; Eric R Bolin; Susan Marqusee; David F Savage
Journal:  Nat Struct Mol Biol       Date:  2020-03-02       Impact factor: 15.369

9.  A gel phase promotes condensation of liquid P granules in Caenorhabditis elegans embryos.

Authors:  Andrea Putnam; Madeline Cassani; Jarrett Smith; Geraldine Seydoux
Journal:  Nat Struct Mol Biol       Date:  2019-03-04       Impact factor: 15.369

10.  Compositional Control of Phase-Separated Cellular Bodies.

Authors:  Salman F Banani; Allyson M Rice; William B Peeples; Yuan Lin; Saumya Jain; Roy Parker; Michael K Rosen
Journal:  Cell       Date:  2016-06-30       Impact factor: 41.582

View more
  5 in total

1.  Surface tension and viscosity of protein condensates quantified by micropipette aspiration.

Authors:  Huan Wang; Fleurie M Kelley; Dragomir Milovanovic; Benjamin S Schuster; Zheng Shi
Journal:  Biophys Rep (N Y)       Date:  2021-08-11

2.  Amphiphilic proteins coassemble into multiphasic condensates and act as biomolecular surfactants.

Authors:  Fleurie M Kelley; Bruna Favetta; Roshan Mammen Regy; Jeetain Mittal; Benjamin S Schuster
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-21       Impact factor: 12.779

3.  Incorporation and Assembly of a Light-Emitting Enzymatic Reaction into Model Protein Condensates.

Authors:  Muyang Guan; Mikael V Garabedian; Marcel Leutenegger; Benjamin S Schuster; Matthew C Good; Daniel A Hammer
Journal:  Biochemistry       Date:  2021-10-14       Impact factor: 3.321

4.  Liquid-liquid phase separation facilitates the biogenesis of secretory storage granules.

Authors:  Cierra K Boyer; Shelby C Bearrows; Kristen E Rohli; Jianchao Zhang; Anup Parchure; Meng Tian; Danièle Stalder; Felix Rivera-Molina; Bulat R Ramazanov; Sushil K Mahata; Yanzhuang Wang; Samuel B Stephens; David C Gershlick; Julia von Blume
Journal:  J Cell Biol       Date:  2022-09-29       Impact factor: 8.077

Review 5.  Nuclear Protein Condensates and Their Properties in Regulation of Gene Expression.

Authors:  Wei Li; Hao Jiang
Journal:  J Mol Biol       Date:  2021-07-14       Impact factor: 6.151

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.