Literature DB >> 34648259

Incorporation and Assembly of a Light-Emitting Enzymatic Reaction into Model Protein Condensates.

Muyang Guan1, Mikael V Garabedian2, Marcel Leutenegger3, Benjamin S Schuster4, Matthew C Good2,5, Daniel A Hammer1,5.   

Abstract

Eukaryotic cells partition enzymes and other cellular components into distinct subcellular compartments to generate specialized biochemical niches. A subclass of these compartments form in the absence of lipid membranes, via liquid-liquid phase separation of proteins to form biomolecular condensates or "membraneless organelles" such as nucleoli, stress granules, and P-bodies. Because of their propensity to form compartments from simple starting materials, membraneless organelles are an attractive target for engineering new functionalities in both living cells and protocells. In this work, we demonstrate incorporation of a novel enzymatic activity in protein coacervates with the light-generating enzyme, NanoLuc, to produce bioluminescence. Using condensates comprised of the disordered RGG domain of Caenorhabditis elegans LAF-1, we functionalized condensates with enzymatic activity in vitro and show that enzyme localization to coacervates enhances assembly and activity of split enzymes. To build condensates that function as light-emitting reactors, we designed a NanoLuc enzyme flanked by RGG domains. The resulting condensates concentrated NanoLuc by 10-fold over bulk solution and displayed significantly increased reaction rates. We further show that condensate viscosity impacts light emission due to diffusion-limited behavior. Because our model condensates have low viscosities, we predict NanoLuc diffusion-limited behavior in most other condensates and thus propose the condensate-Nanoluc system as a potential strategy for high-throughput screening of condensate targeting drugs. By splitting the NanoLuc enzyme into its constituent components, we demonstrate that NanoLuc activity can be reconstituted via co-condensation. In addition, we demonstrate control of the spatial localization of the enzyme within condensates by targettng NanoLuc to the surface of in vitro condensates. Collectively, this work demonstrates that membraneless organelles can be endowed with localized enzymatic activity and that this activity can be spatially and temporally controlled via biochemical reconstitution and design of protein surfactants.

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Year:  2021        PMID: 34648259      PMCID: PMC9322593          DOI: 10.1021/acs.biochem.1c00373

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.321


  66 in total

1.  Transient sequestration of TORC1 into stress granules during heat stress.

Authors:  Terunao Takahara; Tatsuya Maeda
Journal:  Mol Cell       Date:  2012-06-21       Impact factor: 17.970

2.  Detection efficiency in total internal reflection fluorescence microscopy.

Authors:  Marcel Leutenegger; Theo Lasser
Journal:  Opt Express       Date:  2008-06-09       Impact factor: 3.894

3.  The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics.

Authors:  Shana Elbaum-Garfinkle; Younghoon Kim; Krzysztof Szczepaniak; Carlos Chih-Hsiung Chen; Christian R Eckmann; Sua Myong; Clifford P Brangwynne
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-26       Impact factor: 11.205

4.  NanoBRET--A Novel BRET Platform for the Analysis of Protein-Protein Interactions.

Authors:  Thomas Machleidt; Carolyn C Woodroofe; Marie K Schwinn; Jacqui Méndez; Matthew B Robers; Kris Zimmerman; Paul Otto; Danette L Daniels; Thomas A Kirkland; Keith V Wood
Journal:  ACS Chem Biol       Date:  2015-06-09       Impact factor: 5.100

5.  Designer membraneless organelles enable codon reassignment of selected mRNAs in eukaryotes.

Authors:  Christopher D Reinkemeier; Gemma Estrada Girona; Edward A Lemke
Journal:  Science       Date:  2019-03-29       Impact factor: 47.728

6.  Dual specificity kinase DYRK3 couples stress granule condensation/dissolution to mTORC1 signaling.

Authors:  Frank Wippich; Bernd Bodenmiller; Maria Gustafsson Trajkovska; Stefanie Wanka; Ruedi Aebersold; Lucas Pelkmans
Journal:  Cell       Date:  2013-02-14       Impact factor: 41.582

7.  Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization.

Authors:  Amandine Molliex; Jamshid Temirov; Jihun Lee; Maura Coughlin; Anderson P Kanagaraj; Hong Joo Kim; Tanja Mittag; J Paul Taylor
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

8.  SYNZIP protein interaction toolbox: in vitro and in vivo specifications of heterospecific coiled-coil interaction domains.

Authors:  Kenneth Evan Thompson; Caleb J Bashor; Wendell A Lim; Amy E Keating
Journal:  ACS Synth Biol       Date:  2012-04-20       Impact factor: 5.110

9.  Combining fluorescence and bioluminescence microscopy.

Authors:  Kazuhito Goda; Yoko Hatta-Ohashi; Ryutaro Akiyoshi; Takashi Sugiyama; Ikuko Sakai; Takeo Takahashi; Hirobumi Suzuki
Journal:  Microsc Res Tech       Date:  2015-06-19       Impact factor: 2.769

10.  Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.

Authors:  Adam G Larson; Daniel Elnatan; Madeline M Keenen; Michael J Trnka; Jonathan B Johnston; Alma L Burlingame; David A Agard; Sy Redding; Geeta J Narlikar
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

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