Literature DB >> 34271007

Nuclear Protein Condensates and Their Properties in Regulation of Gene Expression.

Wei Li1, Hao Jiang2.   

Abstract

Our understanding of the spatiotemporal regulation of eukaryotic gene expression has recently been greatly stimulated by the findings that many of the regulators of chromatin, transcription, and RNA processing form biomolecular condensates often assembled through liquid-liquid phase separation. Increasing number of reports suggest that these condensates functionally regulate gene expression, largely by concentrating the relevant biomolecules in the liquid-like micro-compartments. However, it remains poorly understood how the physicochemical properties, especially the material properties, of the condensates regulate gene expression activity. In this review, we discuss current data on various nuclear condensates and their biophysical properties with the underlying molecular interactions, and how they may functionally impact gene expression at the level of chromatin organization and activities, transcription, and RNA processing.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  biomolecular condensates; chromatin and transcription; gene expression; liquid-liquid phase separation; material properties

Mesh:

Substances:

Year:  2021        PMID: 34271007      PMCID: PMC9012237          DOI: 10.1016/j.jmb.2021.167151

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   6.151


  124 in total

Review 1.  Formation of Chromatin Subcompartments by Phase Separation.

Authors:  Fabian Erdel; Karsten Rippe
Journal:  Biophys J       Date:  2018-04-06       Impact factor: 4.033

2.  Splicing Activation by Rbfox Requires Self-Aggregation through Its Tyrosine-Rich Domain.

Authors:  Yi Ying; Xiao-Jun Wang; Celine K Vuong; Chia-Ho Lin; Andrey Damianov; Douglas L Black
Journal:  Cell       Date:  2017-07-13       Impact factor: 41.582

Review 3.  Organization and Function of Non-dynamic Biomolecular Condensates.

Authors:  Jeffrey B Woodruff; Anthony A Hyman; Elvan Boke
Journal:  Trends Biochem Sci       Date:  2017-12-16       Impact factor: 13.807

4.  Composition-dependent thermodynamics of intracellular phase separation.

Authors:  Joshua A Riback; Lian Zhu; Mylene C Ferrolino; Michele Tolbert; Diana M Mitrea; David W Sanders; Ming-Tzo Wei; Richard W Kriwacki; Clifford P Brangwynne
Journal:  Nature       Date:  2020-05-06       Impact factor: 49.962

Review 5.  Biogenesis and function of nuclear bodies.

Authors:  Yuntao S Mao; Bin Zhang; David L Spector
Journal:  Trends Genet       Date:  2011-06-15       Impact factor: 11.639

6.  Nuclear-Import Receptors Reverse Aberrant Phase Transitions of RNA-Binding Proteins with Prion-like Domains.

Authors:  Lin Guo; Hong Joo Kim; Hejia Wang; John Monaghan; Fernande Freyermuth; Julie C Sung; Kevin O'Donovan; Charlotte M Fare; Zamia Diaz; Nikita Singh; Zi Chao Zhang; Maura Coughlin; Elizabeth A Sweeny; Morgan E DeSantis; Meredith E Jackrel; Christopher B Rodell; Jason A Burdick; Oliver D King; Aaron D Gitler; Clotilde Lagier-Tourenne; Udai Bhan Pandey; Yuh Min Chook; J Paul Taylor; James Shorter
Journal:  Cell       Date:  2018-04-19       Impact factor: 41.582

Review 7.  The Structure and Dynamics of Higher-Order Assemblies: Amyloids, Signalosomes, and Granules.

Authors:  Hao Wu; Monika Fuxreiter
Journal:  Cell       Date:  2016-05-19       Impact factor: 41.582

8.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

9.  Pol II phosphorylation regulates a switch between transcriptional and splicing condensates.

Authors:  Yang Eric Guo; John C Manteiga; Jonathan E Henninger; Benjamin R Sabari; Alessandra Dall'Agnese; Nancy M Hannett; Jan-Hendrik Spille; Lena K Afeyan; Alicia V Zamudio; Krishna Shrinivas; Brian J Abraham; Ann Boija; Tim-Michael Decker; Jenna K Rimel; Charli B Fant; Tong Ihn Lee; Ibrahim I Cisse; Phillip A Sharp; Dylan J Taatjes; Richard A Young
Journal:  Nature       Date:  2019-08-07       Impact factor: 49.962

Review 10.  Modes of phase separation affecting chromatin regulation.

Authors:  Spiros Palikyras; Argyris Papantonis
Journal:  Open Biol       Date:  2019-10-16       Impact factor: 6.411

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  3 in total

1.  The Regulatory Roles of Intrinsically Disordered Linker in VRN1-DNA Phase Separation.

Authors:  Qiaojing Huang; Yanyan Wang; Zhirong Liu; Luhua Lai
Journal:  Int J Mol Sci       Date:  2022-04-21       Impact factor: 6.208

2.  Epigenetic condensates regulate chromatin activity and tumorigenesis.

Authors:  Bi Shi; Wei Li; Hao Jiang
Journal:  Mol Cell Oncol       Date:  2021-11-09

Review 3.  Transcription Regulators and Membraneless Organelles Challenges to Investigate Them.

Authors:  Katarzyna Sołtys; Andrzej Ożyhar
Journal:  Int J Mol Sci       Date:  2021-11-25       Impact factor: 5.923

  3 in total

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