Literature DB >> 33318706

Reprogramming the genetic code.

Daniel de la Torre1, Jason W Chin2.   

Abstract

The encoded biosynthesis of proteins provides the ultimate paradigm for high-fidelity synthesis of long polymers of defined sequence and composition, but it is limited to polymerizing the canonical amino acids. Recent advances have built on genetic code expansion - which commonly permits the cellular incorporation of one type of non-canonical amino acid into a protein - to enable the encoded incorporation of several distinct non-canonical amino acids. Developments include strategies to read quadruplet codons, use non-natural DNA base pairs, synthesize completely recoded genomes and create orthogonal translational components with reprogrammed specificities. These advances may enable the genetically encoded synthesis of non-canonical biopolymers and provide a platform for transforming the discovery and evolution of new materials and therapeutics.

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Year:  2020        PMID: 33318706     DOI: 10.1038/s41576-020-00307-7

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  175 in total

Review 1.  Designer proteins: applications of genetic code expansion in cell biology.

Authors:  Lloyd Davis; Jason W Chin
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-15       Impact factor: 94.444

Review 2.  Adding new chemistries to the genetic code.

Authors:  Chang C Liu; Peter G Schultz
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

Review 3.  Natural expansion of the genetic code.

Authors:  Alexandre Ambrogelly; Sotiria Palioura; Dieter Söll
Journal:  Nat Chem Biol       Date:  2007-01       Impact factor: 15.040

4.  Expanding the genetic code of Escherichia coli with phosphoserine.

Authors:  Hee-Sung Park; Michael J Hohn; Takuya Umehara; Li-Tao Guo; Edith M Osborne; Jack Benner; Christopher J Noren; Jesse Rinehart; Dieter Söll
Journal:  Science       Date:  2011-08-26       Impact factor: 47.728

Review 5.  Playing with the Molecules of Life.

Authors:  Douglas D Young; Peter G Schultz
Journal:  ACS Chem Biol       Date:  2018-03-02       Impact factor: 5.100

Review 6.  Expanding and reprogramming the genetic code.

Authors:  Jason W Chin
Journal:  Nature       Date:  2017-10-04       Impact factor: 49.962

7.  Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing.

Authors:  Michael Shaofei Zhang; Simon F Brunner; Nicolas Huguenin-Dezot; Alexandria D Liang; Wolfgang H Schmied; Daniel T Rogerson; Jason W Chin
Journal:  Nat Methods       Date:  2017-05-29       Impact factor: 28.547

8.  Efficient genetic encoding of phosphoserine and its nonhydrolyzable analog.

Authors:  Daniel T Rogerson; Amit Sachdeva; Kaihang Wang; Tamanna Haq; Agne Kazlauskaite; Susan M Hancock; Nicolas Huguenin-Dezot; Miratul M K Muqit; Andrew M Fry; Richard Bayliss; Jason W Chin
Journal:  Nat Chem Biol       Date:  2015-06-01       Impact factor: 15.040

Review 9.  Expanding and reprogramming the genetic code of cells and animals.

Authors:  Jason W Chin
Journal:  Annu Rev Biochem       Date:  2014-02-10       Impact factor: 23.643

10.  Genetically Encoded Protein Phosphorylation in Mammalian Cells.

Authors:  Václav Beránek; Christopher D Reinkemeier; Michael S Zhang; Alexandria D Liang; Gene Kym; Jason W Chin
Journal:  Cell Chem Biol       Date:  2018-06-21       Impact factor: 8.116

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  24 in total

1.  A 68-codon genetic code to incorporate four distinct non-canonical amino acids enabled by automated orthogonal mRNA design.

Authors:  Daniel L Dunkelmann; Sebastian B Oehm; Adam T Beattie; Jason W Chin
Journal:  Nat Chem       Date:  2021-08-23       Impact factor: 24.274

2.  Synthetic Organelles for Multiple mRNA Selective Genetic Code Expansions in Eukaryotes.

Authors:  Christopher D Reinkemeier; Edward A Lemke
Journal:  Methods Mol Biol       Date:  2023

3.  Spatiotemporal multiplexed immunofluorescence imaging of living cells and tissues with bioorthogonal cycling of fluorescent probes.

Authors:  Jina Ko; Martin Wilkovitsch; Juhyun Oh; Rainer H Kohler; Evangelia Bolli; Mikael J Pittet; Claudio Vinegoni; David B Sykes; Hannes Mikula; Ralph Weissleder; Jonathan C T Carlson
Journal:  Nat Biotechnol       Date:  2022-06-02       Impact factor: 68.164

4.  A Chemical Biology Primer for NMR Spectroscopists.

Authors:  Evan T Clark; Elanor E Sievers; Galia T Debelouchina
Journal:  J Magn Reson Open       Date:  2022-02-18

Review 5.  Genetic Approaches for Controlling CRISPR-based Autonomous Homing Gene Drives.

Authors:  Pratima R Chennuri; Zach N Adelman; Kevin M Myles
Journal:  Front Bioeng Biotechnol       Date:  2022-06-15

6.  Sense codon reassignment enables viral resistance and encoded polymer synthesis.

Authors:  Wesley E Robertson; Louise F H Funke; Daniel de la Torre; Julius Fredens; Thomas S Elliott; Martin Spinck; Yonka Christova; Daniele Cervettini; Franz L Böge; Kim C Liu; Salvador Buse; Sarah Maslen; George P C Salmond; Jason W Chin
Journal:  Science       Date:  2021-06-04       Impact factor: 47.728

7.  Genetic code degeneracy is established by the decoding center of the ribosome.

Authors:  Shixin Ye; Jean Lehmann
Journal:  Nucleic Acids Res       Date:  2022-04-22       Impact factor: 19.160

8.  Efficient Amber Suppression via Ribosomal Skipping for In Situ Synthesis of Photoconditional Nanobodies.

Authors:  Eike F Joest; Christian Winter; Joshua S Wesalo; Alexander Deiters; Robert Tampé
Journal:  ACS Synth Biol       Date:  2022-01-21       Impact factor: 5.249

9.  Directed-evolution of translation system for efficient unnatural amino acids incorporation and generalizable synthetic auxotroph construction.

Authors:  Hongxia Zhao; Wenlong Ding; Jia Zang; Yang Yang; Chao Liu; Linzhen Hu; Yulin Chen; Guanglong Liu; Yu Fang; Ying Yuan; Shixian Lin
Journal:  Nat Commun       Date:  2021-12-02       Impact factor: 14.919

10.  Repurposing tRNAs for nonsense suppression.

Authors:  Suki Albers; Bertrand Beckert; Marco C Matthies; Chandra Sekhar Mandava; Raphael Schuster; Carolin Seuring; Maria Riedner; Suparna Sanyal; Andrew E Torda; Daniel N Wilson; Zoya Ignatova
Journal:  Nat Commun       Date:  2021-06-22       Impact factor: 14.919

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