Literature DB >> 17173027

Natural expansion of the genetic code.

Alexandre Ambrogelly1, Sotiria Palioura, Dieter Söll.   

Abstract

At the time of its discovery four decades ago, the genetic code was viewed as the result of a "frozen accident." Our current knowledge of the translation process and of the detailed structure of its components highlights the roles of RNA structure (in mRNA and tRNA), RNA modification (in tRNA), and aminoacyl-tRNA synthetase diversity in the evolution of the genetic code. The diverse assortment of codon reassignments present in subcellular organelles and organisms of distinct lineages has 'thawed' the concept of a universal immutable code; it may not be accidental that out of more than 140 amino acids found in natural proteins, only two (selenocysteine and pyrrolysine) are known to have been added to the standard 20-member amino acid alphabet. The existence of phosphoseryl-tRNA (in the form of tRNACys and tRNASec) may presage the discovery of other cotranslationally inserted modified amino acids.

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Year:  2007        PMID: 17173027     DOI: 10.1038/nchembio847

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  110 in total

1.  Mutational analysis of Sep-tRNA:Cys-tRNA synthase reveals critical residues for tRNA-dependent cysteine formation.

Authors:  Sunna Helgadóttir; Sylvie Sinapah; Dieter Söll; Jiqiang Ling
Journal:  FEBS Lett       Date:  2011-12-09       Impact factor: 4.124

2.  The rules of variation: amino acid exchange according to the rotating circular genetic code.

Authors:  Fernando Castro-Chavez
Journal:  J Theor Biol       Date:  2010-04-03       Impact factor: 2.691

Review 3.  Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.

Authors:  Pavel V Baranov; John F Atkins; Martina M Yordanova
Journal:  Nat Rev Genet       Date:  2015-08-11       Impact factor: 53.242

4.  Regulation of the extracellular antioxidant selenoprotein plasma glutathione peroxidase (GPx-3) in mammalian cells.

Authors:  Filomena G Ottaviano; Shiow-Shih Tang; Diane E Handy; Joseph Loscalzo
Journal:  Mol Cell Biochem       Date:  2009-02-15       Impact factor: 3.396

Review 5.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

Review 6.  Translational recoding in archaea.

Authors:  Beatrice Cobucci-Ponzano; Mosè Rossi; Marco Moracci
Journal:  Extremophiles       Date:  2012-09-27       Impact factor: 2.395

7.  Upgrading protein synthesis for synthetic biology.

Authors:  Patrick O'Donoghue; Jiqiang Ling; Yane-Shih Wang; Dieter Söll
Journal:  Nat Chem Biol       Date:  2013-10       Impact factor: 15.040

Review 8.  Distinct genetic code expansion strategies for selenocysteine and pyrrolysine are reflected in different aminoacyl-tRNA formation systems.

Authors:  Jing Yuan; Patrick O'Donoghue; Alex Ambrogelly; Sarath Gundllapalli; R Lynn Sherrer; Sotiria Palioura; Miljan Simonović; Dieter Söll
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

9.  The appearance of pyrrolysine in tRNAHis guanylyltransferase by neutral evolution.

Authors:  Ilka U Heinemann; Patrick O'Donoghue; Catherine Madinger; Jack Benner; Lennart Randau; Christopher J Noren; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-24       Impact factor: 11.205

10.  The human SepSecS-tRNASec complex reveals the mechanism of selenocysteine formation.

Authors:  Sotiria Palioura; R Lynn Sherrer; Thomas A Steitz; Dieter Söll; Miljan Simonovic
Journal:  Science       Date:  2009-07-17       Impact factor: 47.728

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