Literature DB >> 24555827

Expanding and reprogramming the genetic code of cells and animals.

Jason W Chin1.   

Abstract

Genetic code expansion and reprogramming enable the site-specific incorporation of diverse designer amino acids into proteins produced in cells and animals. Recent advances are enhancing the efficiency of unnatural amino acid incorporation by creating and evolving orthogonal ribosomes and manipulating the genome. Increasing the number of distinct amino acids that can be site-specifically encoded has been facilitated by the evolution of orthogonal quadruplet decoding ribosomes and the discovery of mutually orthogonal synthetase/tRNA pairs. Rapid progress in moving genetic code expansion from bacteria to eukaryotic cells and animals (C. elegans and D. melanogaster) and the incorporation of useful unnatural amino acids has been aided by the development and application of the pyrrolysyl-transfer RNA (tRNA) synthetase/tRNA pair for unnatural amino acid incorporation. Combining chemoselective reactions with encoded amino acids has facilitated the installation of posttranslational modifications, as well as rapid derivatization with diverse fluorophores for imaging.

Entities:  

Keywords:  amino acid; aminoacyl-tRNA synthetase; bioorthogonal reaction; genetic code expansion; posttranslational modification; protein chemistry; protein labeling; ribosome; synthetic biology; tRNA

Mesh:

Substances:

Year:  2014        PMID: 24555827     DOI: 10.1146/annurev-biochem-060713-035737

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  163 in total

1.  Semisynthetic protein nanoreactor for single-molecule chemistry.

Authors:  Joongoo Lee; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

Review 2.  Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.

Authors:  Pavel V Baranov; John F Atkins; Martina M Yordanova
Journal:  Nat Rev Genet       Date:  2015-08-11       Impact factor: 53.242

3.  Improved Incorporation of Noncanonical Amino Acids by an Engineered tRNA(Tyr) Suppressor.

Authors:  Benjamin J Rauch; Joseph J Porter; Ryan A Mehl; John J Perona
Journal:  Biochemistry       Date:  2016-01-08       Impact factor: 3.162

4.  Photo-lysine captures proteins that bind lysine post-translational modifications.

Authors:  Tangpo Yang; Xiao-Meng Li; Xiucong Bao; Yi Man Eva Fung; Xiang David Li
Journal:  Nat Chem Biol       Date:  2015-12-21       Impact factor: 15.040

Review 5.  Development and application of bond cleavage reactions in bioorthogonal chemistry.

Authors:  Jie Li; Peng R Chen
Journal:  Nat Chem Biol       Date:  2016-03       Impact factor: 15.040

6.  Cell-Lineage Tracing in Zebrafish Embryos with an Expanded Genetic Code.

Authors:  Wes Brown; Jihe Liu; Michael Tsang; Alexander Deiters
Journal:  Chembiochem       Date:  2018-05-18       Impact factor: 3.164

Review 7.  Repurposing ribosomes for synthetic biology.

Authors:  Yi Liu; Do Soon Kim; Michael C Jewett
Journal:  Curr Opin Chem Biol       Date:  2017-09-01       Impact factor: 8.822

8.  Rapid discovery and evolution of orthogonal aminoacyl-tRNA synthetase-tRNA pairs.

Authors:  Daniele Cervettini; Shan Tang; Stephen D Fried; Julian C W Willis; Louise F H Funke; Lucy J Colwell; Jason W Chin
Journal:  Nat Biotechnol       Date:  2020-04-13       Impact factor: 54.908

9.  Constructing New Bioorthogonal Reagents and Reactions.

Authors:  R David Row; Jennifer A Prescher
Journal:  Acc Chem Res       Date:  2018-05-04       Impact factor: 22.384

10.  Genetic code expansion in the mouse brain.

Authors:  Russell J Ernst; Toke P Krogager; Elizabeth S Maywood; Roberto Zanchi; Václav Beránek; Thomas S Elliott; Nicholas P Barry; Michael H Hastings; Jason W Chin
Journal:  Nat Chem Biol       Date:  2016-08-29       Impact factor: 15.040

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