Literature DB >> 21868676

Expanding the genetic code of Escherichia coli with phosphoserine.

Hee-Sung Park1, Michael J Hohn, Takuya Umehara, Li-Tao Guo, Edith M Osborne, Jack Benner, Christopher J Noren, Jesse Rinehart, Dieter Söll.   

Abstract

O-Phosphoserine (Sep), the most abundant phosphoamino acid in the eukaryotic phosphoproteome, is not encoded in the genetic code, but synthesized posttranslationally. Here, we present an engineered system for specific cotranslational Sep incorporation (directed by UAG) into any desired position in a protein by an Escherichia coli strain that harbors a Sep-accepting transfer RNA (tRNA(Sep)), its cognate Sep-tRNA synthetase (SepRS), and an engineered EF-Tu (EF-Sep). Expanding the genetic code rested on reengineering EF-Tu to relax its quality-control function and permit Sep-tRNA(Sep) binding. To test our system, we synthesized the activated form of human mitogen-activated ERK activating kinase 1 (MEK1) with either one or two Sep residues cotranslationally inserted in their canonical positions (Sep(218), Sep(222)). This system has general utility in protein engineering, molecular biology, and disease research.

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Year:  2011        PMID: 21868676      PMCID: PMC5547737          DOI: 10.1126/science.1207203

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  25 in total

Review 1.  The protein kinase complement of the human genome.

Authors:  G Manning; D B Whyte; R Martinez; T Hunter; S Sudarsanam
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

Review 2.  Adding new chemistries to the genetic code.

Authors:  Chang C Liu; Peter G Schultz
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

3.  Emergence of the universal genetic code imprinted in an RNA record.

Authors:  Michael J Hohn; Hee-Sung Park; Patrick O'Donoghue; Michael Schnitzbauer; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-16       Impact factor: 11.205

4.  Tuning the affinity of aminoacyl-tRNA to elongation factor Tu for optimal decoding.

Authors:  Jared M Schrader; Stephen J Chapman; Olke C Uhlenbeck
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-14       Impact factor: 11.205

5.  Precise manipulation of chromosomes in vivo enables genome-wide codon replacement.

Authors:  Farren J Isaacs; Peter A Carr; Harris H Wang; Marc J Lajoie; Bram Sterling; Laurens Kraal; Andrew C Tolonen; Tara A Gianoulis; Daniel B Goodman; Nikos B Reppas; Christopher J Emig; Duhee Bang; Samuel J Hwang; Michael C Jewett; Joseph M Jacobson; George M Church
Journal:  Science       Date:  2011-07-15       Impact factor: 47.728

6.  Toward understanding phosphoseryl-tRNACys formation: the crystal structure of Methanococcus maripaludis phosphoseryl-tRNA synthetase.

Authors:  Satwik Kamtekar; Michael J Hohn; Hee-Sung Park; Michael Schnitzbauer; Anselm Sauerwald; Dieter Söll; Thomas A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-14       Impact factor: 11.205

7.  Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.

Authors:  Ryuya Fukunaga; Shigeyuki Yokoyama
Journal:  Nat Struct Mol Biol       Date:  2007-03-11       Impact factor: 15.369

8.  Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

Authors:  Jesper V Olsen; Blagoy Blagoev; Florian Gnad; Boris Macek; Chanchal Kumar; Peter Mortensen; Matthias Mann
Journal:  Cell       Date:  2006-11-03       Impact factor: 41.582

9.  Elongation factor Tu mutants expand amino acid tolerance of protein biosynthesis system.

Authors:  Yoshio Doi; Takashi Ohtsuki; Yoshihiro Shimizu; Takuya Ueda; Masahiko Sisido
Journal:  J Am Chem Soc       Date:  2007-10-25       Impact factor: 15.419

Review 10.  The many levels of control on bacterial selenoprotein synthesis.

Authors:  Satoko Yoshizawa; August Böck
Journal:  Biochim Biophys Acta       Date:  2009-03-27
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  152 in total

Review 1.  Catalytic mechanisms and regulation of protein kinases.

Authors:  Zhihong Wang; Philip A Cole
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  A genetic code for phosphoprotein production.

Authors:  Monya baker
Journal:  Nat Methods       Date:  2011       Impact factor: 28.547

Review 3.  Designer proteins: applications of genetic code expansion in cell biology.

Authors:  Lloyd Davis; Jason W Chin
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-15       Impact factor: 94.444

4.  Improved Incorporation of Noncanonical Amino Acids by an Engineered tRNA(Tyr) Suppressor.

Authors:  Benjamin J Rauch; Joseph J Porter; Ryan A Mehl; John J Perona
Journal:  Biochemistry       Date:  2016-01-08       Impact factor: 3.162

5.  Aminoacylation of tRNA 2'- or 3'-hydroxyl by phosphoseryl- and pyrrolysyl-tRNA synthetases.

Authors:  Markus Englert; Sarath Moses; Michael Hohn; Jiqiang Ling; Patrick O'Donoghue; Dieter Söll
Journal:  FEBS Lett       Date:  2013-09-08       Impact factor: 4.124

6.  Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion.

Authors:  Patrick O'Donoghue; Laure Prat; Ilka U Heinemann; Jiqiang Ling; Keturah Odoi; Wenshe R Liu; Dieter Söll
Journal:  FEBS Lett       Date:  2012-10-01       Impact factor: 4.124

7.  ACBD6 protein controls acyl chain availability and specificity of the N-myristoylation modification of proteins.

Authors:  Eric Soupene; Frans A Kuypers
Journal:  J Lipid Res       Date:  2019-01-14       Impact factor: 5.922

8.  Rapid discovery and evolution of orthogonal aminoacyl-tRNA synthetase-tRNA pairs.

Authors:  Daniele Cervettini; Shan Tang; Stephen D Fried; Julian C W Willis; Louise F H Funke; Lucy J Colwell; Jason W Chin
Journal:  Nat Biotechnol       Date:  2020-04-13       Impact factor: 54.908

9.  Upgrading protein synthesis for synthetic biology.

Authors:  Patrick O'Donoghue; Jiqiang Ling; Yane-Shih Wang; Dieter Söll
Journal:  Nat Chem Biol       Date:  2013-10       Impact factor: 15.040

10.  FFAT motif phosphorylation controls formation and lipid transfer function of inter-organelle contacts.

Authors:  Thomas Di Mattia; Arthur Martinet; Souade Ikhlef; Alastair G McEwen; Yves Nominé; Corinne Wendling; Pierre Poussin-Courmontagne; Laetitia Voilquin; Pascal Eberling; Frank Ruffenach; Jean Cavarelli; John Slee; Timothy P Levine; Guillaume Drin; Catherine Tomasetto; Fabien Alpy
Journal:  EMBO J       Date:  2020-10-30       Impact factor: 11.598

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