Literature DB >> 33044817

DNA-Encoded Chemistry: Drug Discovery from a Few Good Reactions.

Patrick R Fitzgerald1, Brian M Paegel2,3.   

Abstract

Click chemistry, proposed nearly 20 years ago, promised access to novel chemical space by empowering combinatorial library synthesis with a "few good reactions". These click reactions fulfilled key criteria (broad scope, quantitative yield, abundant starting material, mild reaction conditions, and high chemoselectivity), keeping the focus on molecules that would be easy to make, yet structurally diverse. This philosophy bears a striking resemblance to DNA-encoded library (DEL) technology, the now-dominant combinatorial chemistry paradigm. This review highlights the similarities between click and DEL reaction design and deployment in combinatorial library settings, providing a framework for the design of new DEL synthesis technologies to enable next-generation drug discovery.

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Year:  2020        PMID: 33044817      PMCID: PMC8345262          DOI: 10.1021/acs.chemrev.0c00789

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   72.087


  156 in total

1.  Click Chemistry: Diverse Chemical Function from a Few Good Reactions.

Authors:  Hartmuth C. Kolb; M. G. Finn; K. Barry Sharpless
Journal:  Angew Chem Int Ed Engl       Date:  2001-06-01       Impact factor: 15.336

2.  Discovery of Potent and Selective Inhibitors for ADAMTS-4 through DNA-Encoded Library Technology (ELT).

Authors:  Yun Ding; Heather O'Keefe; Jennifer L DeLorey; David I Israel; Jeffrey A Messer; Cynthia H Chiu; Steven R Skinner; Rosalie E Matico; Monique F Murray-Thompson; Fan Li; Matthew A Clark; John W Cuozzo; Christopher Arico-Muendel; Barry A Morgan
Journal:  ACS Med Chem Lett       Date:  2015-07-07       Impact factor: 4.345

3.  High-throughput sequencing allows the identification of binding molecules isolated from DNA-encoded chemical libraries.

Authors:  Luca Mannocci; Yixin Zhang; Jörg Scheuermann; Markus Leimbacher; Gianluca De Bellis; Ermanno Rizzi; Christoph Dumelin; Samu Melkko; Dario Neri
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-10       Impact factor: 11.205

4.  Kinetically guided radical-based synthesis of C(sp3)-C(sp3) linkages on DNA.

Authors:  Jie Wang; Helena Lundberg; Shota Asai; Pedro Martín-Acosta; Jason S Chen; Stephen Brown; William Farrell; Russell G Dushin; Christopher J O'Donnell; Anokha S Ratnayake; Paul Richardson; Zhiqing Liu; Tian Qin; Donna G Blackmond; Phil S Baran
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-26       Impact factor: 11.205

5.  Peptidotriazoles on solid phase: [1,2,3]-triazoles by regiospecific copper(i)-catalyzed 1,3-dipolar cycloadditions of terminal alkynes to azides.

Authors:  Christian W Tornøe; Caspar Christensen; Morten Meldal
Journal:  J Org Chem       Date:  2002-05-03       Impact factor: 4.354

6.  Copper-Catalyzed Azide-Alkyne Click Chemistry for Bioconjugation.

Authors:  Stanislav I Presolski; Vu Phong Hong; M G Finn
Journal:  Curr Protoc Chem Biol       Date:  2011-12-01

7.  SuFEx Click Chemistry Enabled Late-Stage Drug Functionalization.

Authors:  Zilei Liu; Jie Li; Suhua Li; Gencheng Li; K Barry Sharpless; Peng Wu
Journal:  J Am Chem Soc       Date:  2018-02-16       Impact factor: 15.419

8.  Discovering Drugs with DNA-Encoded Library Technology: From Concept to Clinic with an Inhibitor of Soluble Epoxide Hydrolase.

Authors:  Svetlana L Belyanskaya; Yun Ding; James F Callahan; Aili L Lazaar; David I Israel
Journal:  Chembiochem       Date:  2017-03-24       Impact factor: 3.164

9.  Water-Compatible Cycloadditions of Oligonucleotide-Conjugated Strained Allenes for DNA-Encoded Library Synthesis.

Authors:  Matthias V Westphal; Liam Hudson; Jeremy W Mason; Johan A Pradeilles; Frédéric J Zécri; Karin Briner; Stuart L Schreiber
Journal:  J Am Chem Soc       Date:  2020-04-16       Impact factor: 15.419

10.  An Amphiphilic Polymer-Supported Strategy Enables Chemical Transformations under Anhydrous Conditions for DNA-Encoded Library Synthesis.

Authors:  Yves Ruff; Roberto Martinez; Xavier Pellé; Pierre Nimsgern; Pascale Fille; Maxim Ratnikov; Frédéric Berst
Journal:  ACS Comb Sci       Date:  2020-02-27       Impact factor: 3.784

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  14 in total

Review 1.  DNA-Encoded Chemical Libraries: A Comprehensive Review with Succesful Stories and Future Challenges.

Authors:  Adrián Gironda-Martínez; Etienne J Donckele; Florent Samain; Dario Neri
Journal:  ACS Pharmacol Transl Sci       Date:  2021-06-14

2.  Synthesis and direct assay of large macrocycle diversities by combinatorial late-stage modification at picomole scale.

Authors:  Sevan Habeshian; Manuel Leonardo Merz; Gontran Sangouard; Ganesh Kumar Mothukuri; Mischa Schüttel; Zsolt Bognár; Cristina Díaz-Perlas; Jonathan Vesin; Julien Bortoli Chapalay; Gerardo Turcatti; Laura Cendron; Alessandro Angelini; Christian Heinis
Journal:  Nat Commun       Date:  2022-07-02       Impact factor: 17.694

3.  Investigations Into Chemically Stabilized Four-Letter DNA for DNA-Encoded Chemistry.

Authors:  Marco Potowski; Verena B K Kunig; Lukas Eberlein; Mateja Klika Škopić; Alexandros Vakalopoulos; Stefan M Kast; Andreas Brunschweiger
Journal:  Front Chem       Date:  2022-06-09       Impact factor: 5.545

Review 4.  Strategies for developing DNA-encoded libraries beyond binding assays.

Authors:  Yiran Huang; Yizhou Li; Xiaoyu Li
Journal:  Nat Chem       Date:  2022-02-04       Impact factor: 24.274

5.  Triazine-Based Covalent DNA-Encoded Libraries for Discovery of Covalent Inhibitors of Target Proteins.

Authors:  Linjie Li; Mingbo Su; Weiwei Lu; Hongzhi Song; Jiaxiang Liu; Xin Wen; Yanrui Suo; Jingjing Qi; Xiaomin Luo; Yu-Bo Zhou; Xin-Hua Liao; Jia Li; Xiaojie Lu
Journal:  ACS Med Chem Lett       Date:  2022-08-15       Impact factor: 4.632

Review 6.  Scanning Protein Surfaces with DNA-Encoded Libraries.

Authors:  Verena B K Kunig; Marco Potowski; Mateja Klika Škopić; Andreas Brunschweiger
Journal:  ChemMedChem       Date:  2020-12-28       Impact factor: 3.466

7.  Photochemical C-H arylation of heteroarenes for DNA-encoded library synthesis.

Authors:  Matthias Krumb; Lisa Marie Kammer; Shorouk O Badir; María Jesús Cabrera-Afonso; Victoria E Wu; Minxue Huang; Adam Csakai; Lisa A Marcaurelle; Gary A Molander
Journal:  Chem Sci       Date:  2021-12-21       Impact factor: 9.825

8.  In-solution direct oxidative coupling for the integration of sulfur/selenium into DNA-encoded chemical libraries.

Authors:  Shilian Yang; Guixian Zhao; Yuting Gao; Yang Sun; Gong Zhang; Xiaohong Fan; Yangfeng Li; Yizhou Li
Journal:  Chem Sci       Date:  2022-02-01       Impact factor: 9.825

Review 9.  Recent advances in DNA-encoded dynamic libraries.

Authors:  Bingbing Shi; Yu Zhou; Xiaoyu Li
Journal:  RSC Chem Biol       Date:  2022-02-17

10.  Converting Double-Stranded DNA-Encoded Libraries (DELs) to Single-Stranded Libraries for More Versatile Selections.

Authors:  Yuhan Gui; Clara Shania Wong; Guixian Zhao; Chao Xie; Rui Hou; Yizhou Li; Gang Li; Xiaoyu Li
Journal:  ACS Omega       Date:  2022-03-24
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