Literature DB >> 35121833

Strategies for developing DNA-encoded libraries beyond binding assays.

Yiran Huang1, Yizhou Li2,3, Xiaoyu Li4,5.   

Abstract

DNA-encoded chemical libraries (DELs) have emerged as a powerful technology in drug discovery. The wide adoption of DELs in the pharmaceutical industry and the rapid advancements of DEL-compatible chemistry have further fuelled its development and applications. In general, a DEL has been considered as a massive binding assay to identify physical binders for individual protein targets. However, recent innovations demonstrate the capability of DELs to operate in the complex milieu of biological systems. In this Perspective, we discuss the recent progress in using DNA-encoded chemical libraries to interrogate complex biological targets and their potential to identify structures that elicit function or possess other useful properties. Future breakthroughs in these aspects are expected to catapult DEL to become a momentous technology platform not only for drug discovery but also to explore fundamental biology.
© 2022. Springer Nature Limited.

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Year:  2022        PMID: 35121833     DOI: 10.1038/s41557-021-00877-x

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.274


  105 in total

1.  The use of mRNA display to select high-affinity protein-binding peptides.

Authors:  D S Wilson; A D Keefe; J W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

2.  Phage antibodies: filamentous phage displaying antibody variable domains.

Authors:  J McCafferty; A D Griffiths; G Winter; D J Chiswell
Journal:  Nature       Date:  1990-12-06       Impact factor: 49.962

3.  Encoded combinatorial chemistry.

Authors:  S Brenner; R A Lerner
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

4.  In vitro selection and evolution of functional proteins by using ribosome display.

Authors:  J Hanes; A Plückthun
Journal:  Proc Natl Acad Sci U S A       Date:  1997-05-13       Impact factor: 11.205

5.  The maturation of DNA encoded libraries: opportunities for new users.

Authors:  Daniel Conole; James H Hunter; Michael J Waring
Journal:  Future Med Chem       Date:  2020-12-04       Impact factor: 3.808

6.  Yeast surface display for screening combinatorial polypeptide libraries.

Authors:  E T Boder; K D Wittrup
Journal:  Nat Biotechnol       Date:  1997-06       Impact factor: 54.908

Review 7.  Chemical composition of DNA-encoded libraries, past present and future.

Authors:  Paige Dickson; Thomas Kodadek
Journal:  Org Biomol Chem       Date:  2019-05-15       Impact factor: 3.876

Review 8.  DNA-Encoded Chemical Libraries: A Selection System Based on Endowing Organic Compounds with Amplifiable Information.

Authors:  Dario Neri; Richard A Lerner
Journal:  Annu Rev Biochem       Date:  2018-01-12       Impact factor: 23.643

9.  Developments in Photoredox-Mediated Alkylation for DNA-Encoded Libraries.

Authors:  Shivani Patel; Shorouk O Badir; Gary A Molander
Journal:  Trends Chem       Date:  2020-12-29

Review 10.  DNA-Encoded Chemistry: Drug Discovery from a Few Good Reactions.

Authors:  Patrick R Fitzgerald; Brian M Paegel
Journal:  Chem Rev       Date:  2020-10-12       Impact factor: 72.087

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  5 in total

1.  DNA-Compatible Suzuki-Miyaura Cross-Coupling Reaction of Aryl Iodides With (Hetero)Aryl Boronic Acids for DNA-Encoded Libraries.

Authors:  Vijay Kumar Siripuram; Yashoda Krishna Sunkari; Thu-Lan Nguyen; Marc Flajolet
Journal:  Front Chem       Date:  2022-06-14       Impact factor: 5.545

2.  Converting Double-Stranded DNA-Encoded Libraries (DELs) to Single-Stranded Libraries for More Versatile Selections.

Authors:  Yuhan Gui; Clara Shania Wong; Guixian Zhao; Chao Xie; Rui Hou; Yizhou Li; Gang Li; Xiaoyu Li
Journal:  ACS Omega       Date:  2022-03-24

3.  Metal-Free and Open-Air Arylation Reactions of Diaryliodonium Salts for DNA-Encoded Library Synthesis.

Authors:  Hongtao Xu; Tingting Tan; Yiyuan Zhang; Yan Wang; Kangyin Pan; Ying Yao; Shuning Zhang; Yuang Gu; Wanting Chen; Jie Li; Hewei Dong; Yu Meng; Peixiang Ma; Wei Hou; Guang Yang
Journal:  Adv Sci (Weinh)       Date:  2022-07-19       Impact factor: 17.521

Review 4.  The protein kinase CK1: Inhibition, activation, and possible allosteric modulation.

Authors:  Yashoda Krishna Sunkari; Laurent Meijer; Marc Flajolet
Journal:  Front Mol Biosci       Date:  2022-08-24

Review 5.  Chemistries and applications of DNA-natural product conjugate.

Authors:  Yuanyuan Chen; Wenting Li; Hang Xing
Journal:  Front Chem       Date:  2022-09-06       Impact factor: 5.545

  5 in total

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