Literature DB >> 29946037

Kinetically guided radical-based synthesis of C(sp3)-C(sp3) linkages on DNA.

Jie Wang1, Helena Lundberg1, Shota Asai1, Pedro Martín-Acosta1, Jason S Chen1, Stephen Brown2, William Farrell3, Russell G Dushin2, Christopher J O'Donnell2, Anokha S Ratnayake2, Paul Richardson3, Zhiqing Liu4, Tian Qin1, Donna G Blackmond5, Phil S Baran5.   

Abstract

DNA-encoded libraries (DEL)-based discovery platforms have recently been widely adopted in the pharmaceutical industry, mainly due to their powerful diversity and incredible number of molecules. In the two decades since their disclosure, great strides have been made to expand the toolbox of reaction modes that are compatible with the idiosyncratic aqueous, dilute, and DNA-sensitive parameters of this system. However, construction of highly important C(sp3)-C(sp3) linkages on DNA through cross-coupling remains unexplored. In this article, we describe a systematic approach to translating standard organic reactions to a DEL setting through the tactical combination of kinetic analysis and empirical screening with information captured from data mining. To exemplify this model, implementation of the Giese addition to forge high value C-C bonds on DNA was studied, which represents a radical-based synthesis in DEL.

Keywords:  DNA-encoded libraries; combinatorial chemistry; kinetic analysis; organic synthesis; radical reactions

Mesh:

Substances:

Year:  2018        PMID: 29946037      PMCID: PMC6048552          DOI: 10.1073/pnas.1806900115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

1.  The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules.

Authors:  Z J Gartner; D R Liu
Journal:  J Am Chem Soc       Date:  2001-07-18       Impact factor: 15.419

Review 2.  DNA-templated organic synthesis: nature's strategy for controlling chemical reactivity applied to synthetic molecules.

Authors:  Xiaoyu Li; David R Liu
Journal:  Angew Chem Int Ed Engl       Date:  2004-09-20       Impact factor: 15.336

3.  Kinetic Profiling of Catalytic Organic Reactions as a Mechanistic Tool.

Authors:  Donna G Blackmond
Journal:  J Am Chem Soc       Date:  2015-08-18       Impact factor: 15.419

4.  Decarboxylative borylation.

Authors:  Chao Li; Jie Wang; Lisa M Barton; Shan Yu; Maoqun Tian; David S Peters; Manoj Kumar; Antony W Yu; Kristen A Johnson; Arnab K Chatterjee; Ming Yan; Phil S Baran
Journal:  Science       Date:  2017-04-13       Impact factor: 47.728

Review 5.  Dual-pharmacophore DNA-encoded chemical libraries.

Authors:  Jörg Scheuermann; Dario Neri
Journal:  Curr Opin Chem Biol       Date:  2015-03-13       Impact factor: 8.822

Review 6.  DNA-encoded chemistry: enabling the deeper sampling of chemical space.

Authors:  Robert A Goodnow; Christoph E Dumelin; Anthony D Keefe
Journal:  Nat Rev Drug Discov       Date:  2016-12-09       Impact factor: 84.694

Review 7.  Small-molecule discovery from DNA-encoded chemical libraries.

Authors:  Ralph E Kleiner; Christoph E Dumelin; David R Liu
Journal:  Chem Soc Rev       Date:  2011-06-14       Impact factor: 54.564

8.  Discovery of Clinical Candidate GSK1842799 As a Selective S1P1 Receptor Agonist (Prodrug) for Multiple Sclerosis.

Authors:  Hongfeng Deng; Sylvie G Bernier; Elisabeth Doyle; Jeanine Lorusso; Barry A Morgan; William F Westlin; Ghotas Evindar
Journal:  ACS Med Chem Lett       Date:  2013-08-27       Impact factor: 4.345

9.  Zn-mediated, Pd-catalyzed cross-couplings in water at room temperature without prior formation of organozinc reagents.

Authors:  Arkady Krasovskiy; Christophe Duplais; Bruce H Lipshutz
Journal:  J Am Chem Soc       Date:  2009-11-04       Impact factor: 15.419

Review 10.  Encoded libraries of chemically modified peptides.

Authors:  Christian Heinis; Greg Winter
Journal:  Curr Opin Chem Biol       Date:  2015-03-11       Impact factor: 8.822

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  31 in total

1.  Expanding Reactivity in DNA-Encoded Library Synthesis via Reversible Binding of DNA to an Inert Quaternary Ammonium Support.

Authors:  Dillon T Flood; Shota Asai; Xuejing Zhang; Jie Wang; Leonard Yoon; Zoë C Adams; Blythe C Dillingham; Brittany B Sanchez; Julien C Vantourout; Mark E Flanagan; David W Piotrowski; Paul Richardson; Samantha A Green; Ryan A Shenvi; Jason S Chen; Phil S Baran; Philip E Dawson
Journal:  J Am Chem Soc       Date:  2019-06-12       Impact factor: 15.419

2.  Forging C(sp3)-C(sp3) Bonds with Carbon-Centered Radicals in the Synthesis of Complex Molecules.

Authors:  Spencer P Pitre; Nicholas A Weires; Larry E Overman
Journal:  J Am Chem Soc       Date:  2019-01-04       Impact factor: 15.419

3.  DNA-Compatible [3 + 2] Nitrone-Olefin Cycloaddition Suitable for DEL Syntheses.

Authors:  Christopher J Gerry; Zhenhua Yang; Michele Stasi; Stuart L Schreiber
Journal:  Org Lett       Date:  2019-02-14       Impact factor: 6.005

4.  A Radical Approach to Anionic Chemistry: Synthesis of Ketones, Alcohols, and Amines.

Authors:  Shengyang Ni; Natalia M Padial; Cian Kingston; Julien C Vantourout; Daniel C Schmitt; Jacob T Edwards; Monika M Kruszyk; Rohan R Merchant; Pavel K Mykhailiuk; Brittany B Sanchez; Shouliang Yang; Matthew A Perry; Gary M Gallego; James J Mousseau; Michael R Collins; Robert J Cherney; Pavlo S Lebed; Jason S Chen; Tian Qin; Phil S Baran
Journal:  J Am Chem Soc       Date:  2019-04-16       Impact factor: 15.419

5.  Considerations for Achieving Maximized DNA Recovery in Solid-Phase DNA-Encoded Library Synthesis.

Authors:  Alexander K Price; Brian M Paegel
Journal:  ACS Comb Sci       Date:  2020-08-24       Impact factor: 3.784

6.  DNA Barcoding a Complete Matrix of Stereoisomeric Small Molecules.

Authors:  Christopher J Gerry; Mathias J Wawer; Paul A Clemons; Stuart L Schreiber
Journal:  J Am Chem Soc       Date:  2019-06-25       Impact factor: 15.419

Review 7.  Dehydroamino acids: chemical multi-tools for late-stage diversification.

Authors:  Jonathan W Bogart; Albert A Bowers
Journal:  Org Biomol Chem       Date:  2019-04-10       Impact factor: 3.876

8.  Ketones from Nickel-Catalyzed Decarboxylative, Non-Symmetric Cross-Electrophile Coupling of Carboxylic Acid Esters.

Authors:  Jiang Wang; Brian P Cary; Peyton D Beyer; Samuel H Gellman; Daniel J Weix
Journal:  Angew Chem Int Ed Engl       Date:  2019-07-30       Impact factor: 15.336

9.  Direct Carbon Isotope Exchange through Decarboxylative Carboxylation.

Authors:  Cian Kingston; Michael A Wallace; Alban J Allentoff; Justine N deGruyter; Jason S Chen; Sharon X Gong; Samuel Bonacorsi; Phil S Baran
Journal:  J Am Chem Soc       Date:  2019-01-03       Impact factor: 15.419

10.  Radical Retrosynthesis.

Authors:  Joel M Smith; Stephen J Harwood; Phil S Baran
Journal:  Acc Chem Res       Date:  2018-08-02       Impact factor: 22.384

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