Literature DB >> 26288689

Discovery of Potent and Selective Inhibitors for ADAMTS-4 through DNA-Encoded Library Technology (ELT).

Yun Ding1, Heather O'Keefe1, Jennifer L DeLorey2, David I Israel1, Jeffrey A Messer1, Cynthia H Chiu1, Steven R Skinner1, Rosalie E Matico3, Monique F Murray-Thompson3, Fan Li4, Matthew A Clark5, John W Cuozzo5, Christopher Arico-Muendel1, Barry A Morgan6.   

Abstract

The aggrecan degrading metalloprotease ADAMTS-4 has been identified as a novel therapeutic target for osteoarthritis. Here, we use DNA-encoded Library Technology (ELT) to identify novel ADAMTS-4 inhibitors from a DNA-encoded triazine library by affinity selection. Structure-activity relationship studies based on the selection information led to the identification of potent and highly selective inhibitors. For example, 4-(((4-(6,7-dimethoxy-3,4-dihydroisoquinolin-2(1H)-yl)-6-(((4-methylpiperazin-1-yl)methyl)amino)-1,3,5-triazin-2-yl)amino)methyl)-N-ethyl-N-(m-tolyl)benzamide has IC50 of 10 nM against ADAMTS-4, with >1000-fold selectivity over ADAMT-5, MMP-13, TACE, and ADAMTS-13. These inhibitors have no obvious zinc ligand functionality.

Entities:  

Keywords:  ADAMTS-4; DNA-encoded library; inhibitors

Year:  2015        PMID: 26288689      PMCID: PMC4538441          DOI: 10.1021/acsmedchemlett.5b00138

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  21 in total

Review 1.  Advances in the development of novel aggrecanase inhibitors.

Authors:  Adam M Gilbert; Jack A Bikker; Steven V O'Neil
Journal:  Expert Opin Ther Pat       Date:  2010-11-26       Impact factor: 6.674

Review 2.  Small-molecule discovery from DNA-encoded chemical libraries.

Authors:  Ralph E Kleiner; Christoph E Dumelin; David R Liu
Journal:  Chem Soc Rev       Date:  2011-06-14       Impact factor: 54.564

Review 3.  Disease-modifying therapies for osteoarthritis : current status.

Authors:  Marc Fajardo; Paul E Di Cesare
Journal:  Drugs Aging       Date:  2005       Impact factor: 3.923

4.  Inhibition of ADAM-TS4 and ADAM-TS5 prevents aggrecan degradation in osteoarthritic cartilage.

Authors:  Anne-Marie Malfait; Rui-Qin Liu; Kosei Ijiri; Setsuro Komiya; Micky D Tortorella
Journal:  J Biol Chem       Date:  2002-04-15       Impact factor: 5.157

5.  Identification of potent and selective hydantoin inhibitors of aggrecanase-1 and aggrecanase-2 that are efficacious in both chemical and surgical models of osteoarthritis.

Authors:  Timothy B Durham; Valentine J Klimkowski; Christopher J Rito; Jothirajah Marimuthu; James L Toth; Chin Liu; Jim D Durbin; Stephanie L Stout; Lisa Adams; Craig Swearingen; Chaohua Lin; Mark G Chambers; Kannan Thirunavukkarasu; Michael R Wiley
Journal:  J Med Chem       Date:  2014-12-05       Impact factor: 7.446

6.  Broad-spectrum matrix metalloproteinase inhibitor marimastat-induced musculoskeletal side effects in rats.

Authors:  Richard Renkiewicz; Luping Qiu; Charles Lesch; Xin Sun; Radhika Devalaraja; Theresa Cody; Eric Kaldjian; Howard Welgus; Vijaykumar Baragi
Journal:  Arthritis Rheum       Date:  2003-06

Review 7.  Progress towards the identification of new aggrecanase inhibitors.

Authors:  Francesca De Rienzo; Puneet Saxena; Federico Filomia; Gianfranco Caselli; Fabrizio Colace; Luigi Stasi; Antonio Giordani; Maria Cristina Menziani
Journal:  Curr Med Chem       Date:  2009       Impact factor: 4.530

8.  Synthesis and biological evaluation of ((4-keto)-phenoxy)methyl biphenyl-4-sulfonamides: a class of potent aggrecanase-1 inhibitors.

Authors:  Darrin W Hopper; Matthew D Vera; David How; Joshua Sabatini; Jason S Xiang; Manus Ipek; Jennifer Thomason; Yonghan Hu; Eric Feyfant; Qin Wang; Katy E Georgiadis; Erica Reifenberg; Richard T Sheldon; Cristin C Keohan; Manas K Majumdar; Elisabeth A Morris; Jerauld Skotnicki; Phaik-Eng Sum
Journal:  Bioorg Med Chem Lett       Date:  2009-03-18       Impact factor: 2.823

9.  Discovery of 1-(1,3,5-triazin-2-yl)piperidine-4-carboxamides as inhibitors of soluble epoxide hydrolase.

Authors:  Reema K Thalji; Jeff J McAtee; Svetlana Belyanskaya; Martin Brandt; Gregory D Brown; Melissa H Costell; Yun Ding; Jason W Dodson; Steve H Eisennagel; Rusty E Fries; Jeffrey W Gross; Mark R Harpel; Dennis A Holt; David I Israel; Larry J Jolivette; Daniel Krosky; Hu Li; Quinn Lu; Tracy Mandichak; Theresa Roethke; Christine G Schnackenberg; Benjamin Schwartz; Lisa M Shewchuk; Wensheng Xie; David J Behm; Stephen A Douglas; Ami L Shaw; Joseph P Marino
Journal:  Bioorg Med Chem Lett       Date:  2013-04-16       Impact factor: 2.823

10.  DNA display II. Genetic manipulation of combinatorial chemistry libraries for small-molecule evolution.

Authors:  David R Halpin; Pehr B Harbury
Journal:  PLoS Biol       Date:  2004-06-22       Impact factor: 8.029

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  18 in total

1.  A Solution Phase Platform to Characterize Chemical Reaction Compatibility with DNA-Encoded Chemical Library Synthesis.

Authors:  Anokha S Ratnayake; Mark E Flanagan; Timothy L Foley; Justin D Smith; Jillian G Johnson; Justin Bellenger; Justin I Montgomery; Brian M Paegel
Journal:  ACS Comb Sci       Date:  2019-09-06       Impact factor: 3.784

Review 2.  DNA-encoded chemistry: enabling the deeper sampling of chemical space.

Authors:  Robert A Goodnow; Christoph E Dumelin; Anthony D Keefe
Journal:  Nat Rev Drug Discov       Date:  2016-12-09       Impact factor: 84.694

3.  Kinetically guided radical-based synthesis of C(sp3)-C(sp3) linkages on DNA.

Authors:  Jie Wang; Helena Lundberg; Shota Asai; Pedro Martín-Acosta; Jason S Chen; Stephen Brown; William Farrell; Russell G Dushin; Christopher J O'Donnell; Anokha S Ratnayake; Paul Richardson; Zhiqing Liu; Tian Qin; Donna G Blackmond; Phil S Baran
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-26       Impact factor: 11.205

4.  Open-Air Alkylation Reactions in Photoredox-Catalyzed DNA-Encoded Library Synthesis.

Authors:  James P Phelan; Simon B Lang; Jaehoon Sim; Simon Berritt; Andrew J Peat; Katelyn Billings; Lijun Fan; Gary A Molander
Journal:  J Am Chem Soc       Date:  2019-02-12       Impact factor: 15.419

5.  Discovery of cofactor-specific, bactericidal Mycobacterium tuberculosis InhA inhibitors using DNA-encoded library technology.

Authors:  Holly H Soutter; Paolo Centrella; Matthew A Clark; John W Cuozzo; Christoph E Dumelin; Marie-Aude Guie; Sevan Habeshian; Anthony D Keefe; Kaitlyn M Kennedy; Eric A Sigel; Dawn M Troast; Ying Zhang; Andrew D Ferguson; Gareth Davies; Eleanor R Stead; Jason Breed; Prashanti Madhavapeddi; Jon A Read
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-18       Impact factor: 11.205

6.  What is a "DNA-Compatible" Reaction?

Authors:  Marie L Malone; Brian M Paegel
Journal:  ACS Comb Sci       Date:  2016-03-23       Impact factor: 3.784

7.  Multifunctional Building Blocks Compatible with Photoredox-Mediated Alkylation for DNA-Encoded Library Synthesis.

Authors:  Shorouk O Badir; Jaehoon Sim; Katelyn Billings; Adam Csakai; Xuange Zhang; Weizhe Dong; Gary A Molander
Journal:  Org Lett       Date:  2020-01-15       Impact factor: 6.005

8.  Efficient copper-catalyzed amination of DNA-conjugated aryl iodides under mild aqueous conditions.

Authors:  Yves Ruff; Frédéric Berst
Journal:  Medchemcomm       Date:  2018-05-17       Impact factor: 3.597

9.  On-DNA Pd and Cu promoted C-N cross-coupling reactions.

Authors:  Xiaojie Lu; Sarah E Roberts; George J Franklin; Christopher P Davie
Journal:  Medchemcomm       Date:  2017-07-12       Impact factor: 3.597

Review 10.  DNA-Encoded Chemical Libraries: A Selection System Based on Endowing Organic Compounds with Amplifiable Information.

Authors:  Dario Neri; Richard A Lerner
Journal:  Annu Rev Biochem       Date:  2018-01-12       Impact factor: 23.643

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