Literature DB >> 32830423

Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.

Albert Kakkis1, Derek Gagnon1, Julian Esselborn1, R David Britt2, F Akif Tezcan1.   

Abstract

To mimic a hypothetical pathway for protein evolution, we previously tailored a monomeric protein (cyt cb562 ) for metal-mediated self-assembly, followed by re-design of the resulting oligomers for enhanced stability and metal-based functions. We show that a single hydrophobic mutation on the cyt cb562 surface drastically alters the outcome of metal-directed oligomerization to yield a new trimeric architecture, (TriCyt1)3. This nascent trimer was redesigned into second and third-generation variants (TriCyt2)3 and (TriCyt3)3 with increased structural stability and preorganization for metal coordination. The three TriCyt variants combined furnish a unique platform to 1) provide tunable coupling between protein quaternary structure and metal coordination, 2) enable the construction of metal/pH-switchable protein oligomerization motifs, and 3) generate a robust metal coordination site that can coordinate all mid-to-late first-row transition-metal ions with high affinity.
© 2020 Wiley-VCH GmbH.

Entities:  

Keywords:  bioinorganic chemistry; metalloproteins; protein design; protein structures; supramolecular chemistry

Mesh:

Substances:

Year:  2020        PMID: 32830423      PMCID: PMC7983065          DOI: 10.1002/anie.202009226

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   16.823


  59 in total

Review 1.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

2.  De Novo Design of Four-Helix Bundle Metalloproteins: One Scaffold, Diverse Reactivities.

Authors:  Angela Lombardi; Fabio Pirro; Ornella Maglio; Marco Chino; William F DeGrado
Journal:  Acc Chem Res       Date:  2019-04-11       Impact factor: 22.384

3.  Templated construction of a Zn-selective protein dimerization motif.

Authors:  Eric N Salgado; Jeffrey D Brodin; Magnus M To; F Akif Tezcan
Journal:  Inorg Chem       Date:  2011-06-07       Impact factor: 5.165

4.  De Novo Design of an Allosteric Metalloprotein Assembly with Strained Disulfide Bonds.

Authors:  Lewis A Churchfield; Annette Medina-Morales; Jeffrey D Brodin; Alfredo Perez; F Akif Tezcan
Journal:  J Am Chem Soc       Date:  2016-09-27       Impact factor: 15.419

Review 5.  Lessons from Nature: A Bio-Inspired Approach to Molecular Design.

Authors:  Sarah A Cook; Ethan A Hill; A S Borovik
Journal:  Biochemistry       Date:  2015-06-30       Impact factor: 3.162

Review 6.  Artificial metalloenzymes derived from three-helix bundles.

Authors:  Alison G Tebo; Vincent L Pecoraro
Journal:  Curr Opin Chem Biol       Date:  2015-01-08       Impact factor: 8.822

7.  Designed metalloprotein stabilizes a semiquinone radical.

Authors:  Gözde Ulas; Thomas Lemmin; Yibing Wu; George T Gassner; William F DeGrado
Journal:  Nat Chem       Date:  2016-02-15       Impact factor: 24.427

Review 8.  Designing hydrolytic zinc metalloenzymes.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Biochemistry       Date:  2014-02-07       Impact factor: 3.162

9.  Design and engineering of an O(2) transport protein.

Authors:  Ronald L Koder; J L Ross Anderson; Lee A Solomon; Konda S Reddy; Christopher C Moser; P Leslie Dutton
Journal:  Nature       Date:  2009-03-19       Impact factor: 49.962

10.  A de novo peroxidase is also a promiscuous yet stereoselective carbene transferase.

Authors:  Richard Stenner; Jack W Steventon; Annela Seddon; J L Ross Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-02       Impact factor: 11.205

View more
  5 in total

Review 1.  Protein Assembly by Design.

Authors:  Jie Zhu; Nicole Avakyan; Albert Kakkis; Alexander M Hoffnagle; Kenneth Han; Yiying Li; Zhiyin Zhang; Tae Su Choi; Youjeong Na; Chung-Jui Yu; F Akif Tezcan
Journal:  Chem Rev       Date:  2021-08-18       Impact factor: 72.087

2.  Redox- and metal-directed structural diversification in designed metalloprotein assemblies.

Authors:  Albert Kakkis; Eyal Golub; Tae Su Choi; F Akif Tezcan
Journal:  Chem Commun (Camb)       Date:  2022-06-16       Impact factor: 6.065

3.  Overcoming universal restrictions on metal selectivity by protein design.

Authors:  Tae Su Choi; F Akif Tezcan
Journal:  Nature       Date:  2022-03-02       Impact factor: 69.504

4.  Unravelling the Structure of the Tetrahedral Metal-Binding Site in METP3 through an Experimental and Computational Approach.

Authors:  Salvatore La Gatta; Linda Leone; Ornella Maglio; Maria De Fenza; Flavia Nastri; Vincenzo Pavone; Marco Chino; Angela Lombardi
Journal:  Molecules       Date:  2021-08-28       Impact factor: 4.411

5.  Controlled Ligand Exchange Between Ruthenium Organometallic Cofactor Precursors and a Naïve Protein Scaffold Generates Artificial Metalloenzymes Catalysing Transfer Hydrogenation.

Authors:  George S Biggs; Oskar James Klein; Sarah L Maslen; J Mark Skehel; Trevor J Rutherford; Stefan M V Freund; Florian Hollfelder; Sally R Boss; Paul D Barker
Journal:  Angew Chem Int Ed Engl       Date:  2021-03-26       Impact factor: 15.336

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.