Literature DB >> 27649076

De Novo Design of an Allosteric Metalloprotein Assembly with Strained Disulfide Bonds.

Lewis A Churchfield1, Annette Medina-Morales1, Jeffrey D Brodin1, Alfredo Perez1, F Akif Tezcan1.   

Abstract

A major goal in metalloprotein design is to build protein scaffolds from scratch that allow precise control over metal coordination. A particular challenge in this regard is the construction of allosteric systems in which metal coordination equilibria are coupled to other chemical events that take place elsewhere in the protein scaffold. We previously developed a metal-templated self-assembly strategy (MeTIR) to build supramolecular protein complexes with tailorable interfaces from monomeric building blocks. Here, using this strategy, we have incorporated multiple disulfide bonds into the interfaces of a Zn-templated cytochrome cb562 assembly in order to create mechanical strain on the quaternary structural level. Structural and biophysical analyses indicate that this strain leads to an allosteric system in which Zn2+ binding and dissociation are remotely coupled to the formation and breakage of a disulfide bond over a distance of >14 Å. The breakage of this strained bond upon Zn2+ dissociation occurs in the absence of any reductants, apparently through a hydrolytic mechanism that generates a sulfenic acid/thiol pair.

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Year:  2016        PMID: 27649076      PMCID: PMC5085265          DOI: 10.1021/jacs.6b08458

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  31 in total

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Authors:  Pernilla Wittung-Stafshede
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Authors:  Hermes Reyes-Caballero; Gregory C Campanello; David P Giedroc
Journal:  Biophys Chem       Date:  2011-04-05       Impact factor: 2.352

3.  The crystallographically determined structures of atypical strained disulfides engineered into subtilisin.

Authors:  B A Katz; A Kossiakoff
Journal:  J Biol Chem       Date:  1986-11-25       Impact factor: 5.157

4.  Kinetics of thiol/disulfide exchange correlate weakly with the restoring force in the disulfide moiety.

Authors:  Timothy J Kucharski; Zhen Huang; Qing-Zheng Yang; Yancong Tian; Nicholas C Rubin; Carlos D Concepcion; Roman Boulatov
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

Review 5.  Allostery and cooperativity revisited.

Authors:  Qiang Cui; Martin Karplus
Journal:  Protein Sci       Date:  2008-06-17       Impact factor: 6.725

Review 6.  Structure-switching biosensors: inspired by Nature.

Authors:  Alexis Vallée-Bélisle; Kevin W Plaxco
Journal:  Curr Opin Struct Biol       Date:  2010-06-02       Impact factor: 6.809

Review 7.  Metals in protein-protein interfaces.

Authors:  Woon Ju Song; Pamela A Sontz; Xavier I Ambroggio; F Akif Tezcan
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

Review 8.  Formation, reactivity, and detection of protein sulfenic acids.

Authors:  Nicholas J Kettenhofen; Matthew J Wood
Journal:  Chem Res Toxicol       Date:  2010-09-16       Impact factor: 3.739

9.  Evolution of metal selectivity in templated protein interfaces.

Authors:  Jeffrey D Brodin; Annette Medina-Morales; Thomas Ni; Eric N Salgado; Xavier I Ambroggio; F Akif Tezcan
Journal:  J Am Chem Soc       Date:  2010-06-30       Impact factor: 15.419

10.  Metal templated design of protein interfaces.

Authors:  Eric N Salgado; Xavier I Ambroggio; Jeffrey D Brodin; Richard A Lewis; Brian Kuhlman; F Akif Tezcan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-23       Impact factor: 11.205

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  14 in total

1.  De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures.

Authors:  Bobo Dang; Haifan Wu; Vikram Khipple Mulligan; Marco Mravic; Yibing Wu; Thomas Lemmin; Alexander Ford; Daniel-Adriano Silva; David Baker; William F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-25       Impact factor: 11.205

Review 2.  Hierarchical design of artificial proteins and complexes toward synthetic structural biology.

Authors:  Ryoichi Arai
Journal:  Biophys Rev       Date:  2017-12-14

3.  Confirmation of intersubunit connectivity and topology of designed protein complexes by native MS.

Authors:  Aniruddha Sahasrabuddhe; Yang Hsia; Florian Busch; William Sheffler; Neil P King; David Baker; Vicki H Wysocki
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-19       Impact factor: 11.205

Review 4.  Allosteric disulfides: Sophisticated molecular structures enabling flexible protein regulation.

Authors:  Joyce Chiu; Philip J Hogg
Journal:  J Biol Chem       Date:  2019-01-10       Impact factor: 5.157

5.  Human Cellular Retinol Binding Protein II Forms a Domain-Swapped Trimer Representing a Novel Fold and a New Template for Protein Engineering.

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Journal:  Chembiochem       Date:  2020-08-14       Impact factor: 3.164

Review 6.  Protein Assembly by Design.

Authors:  Jie Zhu; Nicole Avakyan; Albert Kakkis; Alexander M Hoffnagle; Kenneth Han; Yiying Li; Zhiyin Zhang; Tae Su Choi; Youjeong Na; Chung-Jui Yu; F Akif Tezcan
Journal:  Chem Rev       Date:  2021-08-18       Impact factor: 72.087

7.  Redox- and metal-directed structural diversification in designed metalloprotein assemblies.

Authors:  Albert Kakkis; Eyal Golub; Tae Su Choi; F Akif Tezcan
Journal:  Chem Commun (Camb)       Date:  2022-06-16       Impact factor: 6.065

8.  Determining the Structural and Energetic Basis of Allostery in a De Novo Designed Metalloprotein Assembly.

Authors:  Lewis A Churchfield; Robert G Alberstein; Laura M Williamson; F Akif Tezcan
Journal:  J Am Chem Soc       Date:  2018-07-25       Impact factor: 15.419

9.  Design of metal-mediated protein assemblies via hydroxamic acid functionalities.

Authors:  Rohit H Subramanian; Jie Zhu; Jake B Bailey; Jerika A Chiong; Yiying Li; Eyal Golub; F Akif Tezcan
Journal:  Nat Protoc       Date:  2021-05-28       Impact factor: 13.491

10.  Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.

Authors:  Albert Kakkis; Derek Gagnon; Julian Esselborn; R David Britt; F Akif Tezcan
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-28       Impact factor: 16.823

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