Literature DB >> 24661096

Protein design: toward functional metalloenzymes.

Fangting Yu1, Virginia M Cangelosi, Melissa L Zastrow, Matteo Tegoni, Jefferson S Plegaria, Alison G Tebo, Catherine S Mocny, Leela Ruckthong, Hira Qayyum, Vincent L Pecoraro.   

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Year:  2014        PMID: 24661096      PMCID: PMC4300145          DOI: 10.1021/cr400458x

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


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  817 in total

Review 1.  Electronic structure and its relation to function in copper proteins.

Authors:  Robert K Szilagyi; Edward I Solomon
Journal:  Curr Opin Chem Biol       Date:  2002-04       Impact factor: 8.822

Review 2.  Theoretical and computational protein design.

Authors:  Ilan Samish; Christopher M MacDermaid; Jose Manuel Perez-Aguilar; Jeffery G Saven
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

3.  Ligand binding properties of two kinds of reconstituted myoglobins with iron porphycene having propionates: effect of beta-pyrrolic position of two propionate side chains in porphycene framework.

Authors:  Takashi Matsuo; Takahiro Ikegami; Hideaki Sato; Yoshio Hisaeda; Takashi Hayashi
Journal:  J Inorg Biochem       Date:  2006-03-03       Impact factor: 4.155

4.  Protein scaffold of a designed metalloenzyme enhances the chemoselectivity in sulfoxidation of thioanisole.

Authors:  Jun-Long Zhang; Dewain K Garner; Lei Liang; Qian Chen; Yi Lu
Journal:  Chem Commun (Camb)       Date:  2008-02-04       Impact factor: 6.222

Review 5.  Coordination chemistry of copper proteins: how nature handles a toxic cargo for essential function.

Authors:  Jeffrey T Rubino; Katherine J Franz
Journal:  J Inorg Biochem       Date:  2011-12-03       Impact factor: 4.155

6.  An arsenic metallochaperone for an arsenic detoxification pump.

Authors:  Yung-Feng Lin; Adrian R Walmsley; Barry P Rosen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

7.  Understanding metalloprotein folding using a de novo design strategy.

Authors:  Debdip Ghosh; Vincent L Pecoraro
Journal:  Inorg Chem       Date:  2004-12-13       Impact factor: 5.165

8.  Binding of Cu(II) or Zn(II) in a de novo designed triple-stranded alpha-helical coiled-coil toward a prototype for a metalloenzyme.

Authors:  T Kiyokawa; K Kanaori; K Tajima; M Koike; T Mizuno; J-I Oku; T Tanaka
Journal:  J Pept Res       Date:  2004-04

9.  Structural and biophysical analysis of the DNA binding properties of myelin transcription factor 1.

Authors:  Roland Gamsjaeger; Michael K Swanton; Felix J Kobus; Eija Lehtomaki; Jason A Lowry; Ann H Kwan; Jacqueline M Matthews; Joel P Mackay
Journal:  J Biol Chem       Date:  2007-12-11       Impact factor: 5.157

10.  The glucocorticoid receptor binds to defined nucleotide sequences near the promoter of mouse mammary tumour virus.

Authors:  C Scheidereit; S Geisse; H M Westphal; M Beato
Journal:  Nature       Date:  1983 Aug 25-31       Impact factor: 49.962

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  106 in total

1.  Modifying the Steric Properties in the Second Coordination Sphere of Designed Peptides Leads to Enhancement of Nitrite Reductase Activity.

Authors:  Karl J Koebke; Fangting Yu; Elvin Salerno; Casey Van Stappen; Alison G Tebo; James E Penner-Hahn; Vincent L Pecoraro
Journal:  Angew Chem Int Ed Engl       Date:  2018-01-26       Impact factor: 15.336

2.  Noncoded Amino Acids in de Novo Metalloprotein Design: Controlling Coordination Number and Catalysis.

Authors:  Karl J Koebke; Vincent L Pecoraro
Journal:  Acc Chem Res       Date:  2019-04-01       Impact factor: 22.384

3.  Changing the Apoptosis Pathway through Evolutionary Protein Design.

Authors:  David Shultis; Pralay Mitra; Xiaoqiang Huang; Jarrett Johnson; Naureen Aslam Khattak; Felicia Gray; Clint Piper; Jeff Czajka; Logan Hansen; Bingbing Wan; Krishnapriya Chinnaswamy; Liu Liu; Mi Wang; Jingxi Pan; Jeanne Stuckey; Tomasz Cierpicki; Christoph H Borchers; Shaomeng Wang; Ming Lei; Yang Zhang
Journal:  J Mol Biol       Date:  2019-01-06       Impact factor: 5.469

4.  Artificial Diiron Enzymes with a De Novo Designed Four-Helix Bundle Structure.

Authors:  Marco Chino; Ornella Maglio; Flavia Nastri; Vincenzo Pavone; William F DeGrado; Angela Lombardi
Journal:  Eur J Inorg Chem       Date:  2015-07-06       Impact factor: 2.524

Review 5.  Metal Ion Modeling Using Classical Mechanics.

Authors:  Pengfei Li; Kenneth M Merz
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

6.  Lead(II) Binding in Natural and Artificial Proteins.

Authors:  Virginia Cangelosi; Leela Ruckthong; Vincent L Pecoraro
Journal:  Met Ions Life Sci       Date:  2017-04-10

7.  Deciphering metal ion preference and primary coordination sphere robustness of a designed zinc finger with high-resolution mass spectrometry.

Authors:  Mikko Laitaoja; Sari Isoniemi; Jarkko Valjakka; István M Mándity; Janne Jänis
Journal:  Protein Sci       Date:  2016-10-26       Impact factor: 6.725

8.  De novo design and characterization of copper metallopeptides inspired by native cupredoxins.

Authors:  Jefferson S Plegaria; Matteo Duca; Cédric Tard; Thomas J Friedlander; Aniruddha Deb; James E Penner-Hahn; Vincent L Pecoraro
Journal:  Inorg Chem       Date:  2015-09-18       Impact factor: 5.165

9.  Probing Hydrogen Bonding Interactions to Iron-Oxido/Hydroxido Units by 57 Fe Nuclear Resonance Vibrational Spectroscopy.

Authors:  Andrew C Weitz; Ethan A Hill; Victoria F Oswald; Emile L Bominaar; Andrew S Borovik; Michael P Hendrich; Yisong Guo
Journal:  Angew Chem Int Ed Engl       Date:  2018-11-14       Impact factor: 15.336

10.  In-Cell Enzymology To Probe His-Heme Ligation in Heme Oxygenase Catalysis.

Authors:  Paul A Sigala; Koldo Morante; Kouhei Tsumoto; Jose M M Caaveiro; Daniel E Goldberg
Journal:  Biochemistry       Date:  2016-08-15       Impact factor: 3.162

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