Literature DB >> 25579452

Artificial metalloenzymes derived from three-helix bundles.

Alison G Tebo1, Vincent L Pecoraro2.   

Abstract

Three-helix bundles and coiled-coil motifs are well-established de novo designed scaffolds that have been investigated for their metal-binding and catalytic properties. Satisfaction of the primary coordination sphere for a given metal is sufficient to introduce catalytic activity and a given structure may catalyze different reactions dependent on the identity of the incorporated metal. Here we describe recent contributions in the de novo design of metalloenzymes based on three-helix bundles and coiled-coil motifs, focusing on non-heme systems for hydrolytic and redox chemistry.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 25579452      PMCID: PMC4380837          DOI: 10.1016/j.cbpa.2014.12.034

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  27 in total

1.  Side-on copper-nitrosyl coordination by nitrite reductase.

Authors:  Elitza I Tocheva; Federico I Rosell; A Grant Mauk; Michael E P Murphy
Journal:  Science       Date:  2004-05-07       Impact factor: 47.728

2.  Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms.

Authors:  Yan Xu; Liang Feng; Philip D Jeffrey; Yigong Shi; François M M Morel
Journal:  Nature       Date:  2008-03-06       Impact factor: 49.962

3.  The role of protonation and metal chelation preferences in defining the properties of mercury-binding coiled coils.

Authors:  G R Dieckmann; D K McRorie; J D Lear; K A Sharp; W F DeGrado; V L Pecoraro
Journal:  J Mol Biol       Date:  1998-07-31       Impact factor: 5.469

Review 4.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

5.  Designing a functional type 2 copper center that has nitrite reductase activity within α-helical coiled coils.

Authors:  Matteo Tegoni; Fangting Yu; Manuela Bersellini; James E Penner-Hahn; Vincent L Pecoraro
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-10       Impact factor: 11.205

6.  Catalysis by a de novo zinc-mediated protein interface: implications for natural enzyme evolution and rational enzyme engineering.

Authors:  Bryan S Der; David R Edwards; Brian Kuhlman
Journal:  Biochemistry       Date:  2012-04-24       Impact factor: 3.162

7.  Functional consequences of engineering the hydrophobic pocket of carbonic anhydrase II.

Authors:  C A Fierke; T L Calderone; J F Krebs
Journal:  Biochemistry       Date:  1991-11-19       Impact factor: 3.162

8.  A de novo designed metalloenzyme for the hydration of CO2.

Authors:  Virginia M Cangelosi; Aniruddha Deb; James E Penner-Hahn; Vincent L Pecoraro
Journal:  Angew Chem Int Ed Engl       Date:  2014-06-18       Impact factor: 15.336

9.  Hydrolytic catalysis and structural stabilization in a designed metalloprotein.

Authors:  Melissa L Zastrow; Anna F A Peacock; Jeanne A Stuckey; Vincent L Pecoraro
Journal:  Nat Chem       Date:  2011-11-27       Impact factor: 24.427

10.  Short peptides self-assemble to produce catalytic amyloids.

Authors:  Caroline M Rufo; Yurii S Moroz; Olesia V Moroz; Jan Stöhr; Tyler A Smith; Xiaozhen Hu; William F DeGrado; Ivan V Korendovych
Journal:  Nat Chem       Date:  2014-03-16       Impact factor: 24.427

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  15 in total

1.  Shaping quaternary assemblies of water-soluble non-peptide helical foldamers by sequence manipulation.

Authors:  Gavin W Collie; Karolina Pulka-Ziach; Caterina M Lombardo; Juliette Fremaux; Frédéric Rosu; Marion Decossas; Laura Mauran; Olivier Lambert; Valérie Gabelica; Cameron D Mackereth; Gilles Guichard
Journal:  Nat Chem       Date:  2015-09-28       Impact factor: 24.427

Review 2.  Design and engineering of artificial oxygen-activating metalloenzymes.

Authors:  Flavia Nastri; Marco Chino; Ornella Maglio; Ambika Bhagi-Damodaran; Yi Lu; Angela Lombardi
Journal:  Chem Soc Rev       Date:  2016-06-24       Impact factor: 54.564

Review 3.  Design of artificial metalloproteins/metalloenzymes by tuning noncovalent interactions.

Authors:  Shun Hirota; Ying-Wu Lin
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

4.  Development of a Rubredoxin-Type Center Embedded in a de Dovo-Designed Three-Helix Bundle.

Authors:  Alison G Tebo; Tyler B J Pinter; Ricardo García-Serres; Amy L Speelman; Cédric Tard; Olivier Sénéque; Geneviève Blondin; Jean-Marc Latour; James Penner-Hahn; Nicolai Lehnert; Vincent L Pecoraro
Journal:  Biochemistry       Date:  2018-04-09       Impact factor: 3.162

5.  De novo protein design as a methodology for synthetic bioinorganic chemistry.

Authors:  Catherine S Mocny; Vincent L Pecoraro
Journal:  Acc Chem Res       Date:  2015-08-03       Impact factor: 22.384

Review 6.  De novo protein design, a retrospective.

Authors:  Ivan V Korendovych; William F DeGrado
Journal:  Q Rev Biophys       Date:  2020-02-11       Impact factor: 5.318

7.  Spectroscopic and metal binding properties of a de novo metalloprotein binding a tetrazinc cluster.

Authors:  Marco Chino; Shao-Qing Zhang; Fabio Pirro; Linda Leone; Ornella Maglio; Angela Lombardi; William F DeGrado
Journal:  Biopolymers       Date:  2018-09-11       Impact factor: 2.505

8.  Biocatalysts Based on Peptide and Peptide Conjugate Nanostructures.

Authors:  Ian W Hamley
Journal:  Biomacromolecules       Date:  2021-04-12       Impact factor: 6.988

9.  Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.

Authors:  Albert Kakkis; Derek Gagnon; Julian Esselborn; R David Britt; F Akif Tezcan
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-28       Impact factor: 16.823

10.  Stepwise nitrosylation of the nonheme iron site in an engineered azurin and a molecular basis for nitric oxide signaling mediated by nonheme iron proteins.

Authors:  Shiliang Tian; Ruixi Fan; Therese Albert; Rahul L Khade; Huiguang Dai; Kevin A Harnden; Parisa Hosseinzadeh; Jing Liu; Mark J Nilges; Yong Zhang; Pierre Moënne-Loccoz; Yisong Guo; Yi Lu
Journal:  Chem Sci       Date:  2021-03-31       Impact factor: 9.825

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