Literature DB >> 32747754

De novo engineering of intracellular condensates using artificial disordered proteins.

Michael Dzuricky1, Bradley A Rogers2, Abdulla Shahid3,4, Paul S Cremer2, Ashutosh Chilkoti5.   

Abstract

Phase separation of intrinsically disordered proteins (IDPs) is a remarkable feature of living cells to dynamically control intracellular partitioning. Despite the numerous new IDPs that have been identified, progress towards rational engineering in cells has been limited. To address this limitation, we systematically scanned the sequence space of native IDPs and designed artificial IDPs (A-IDPs) with different molecular weights and aromatic content, which exhibit variable condensate saturation concentrations and temperature cloud points in vitro and in cells. We created A-IDP puncta using these simple principles, which are capable of sequestering an enzyme and whose catalytic efficiency can be manipulated by the molecular weight of the A-IDP. These results provide a robust engineered platform for creating puncta with new, phase-separation-mediated control of biological function in living cells.

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Year:  2020        PMID: 32747754      PMCID: PMC8281385          DOI: 10.1038/s41557-020-0511-7

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  58 in total

1.  The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics.

Authors:  Shana Elbaum-Garfinkle; Younghoon Kim; Krzysztof Szczepaniak; Carlos Chih-Hsiung Chen; Christian R Eckmann; Sua Myong; Clifford P Brangwynne
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-26       Impact factor: 11.205

2.  Intrinsically disordered proteins as crucial constituents of cellular aqueous two phase systems and coacervates.

Authors:  Vladimir N Uversky; Irina M Kuznetsova; Konstantin K Turoverov; Boris Zaslavsky
Journal:  FEBS Lett       Date:  2014-11-29       Impact factor: 4.124

Review 3.  Intrinsically disordered proteins in cellular signalling and regulation.

Authors:  Peter E Wright; H Jane Dyson
Journal:  Nat Rev Mol Cell Biol       Date:  2015-01       Impact factor: 94.444

Review 4.  Protein Phase Separation: A New Phase in Cell Biology.

Authors:  Steven Boeynaems; Simon Alberti; Nicolas L Fawzi; Tanja Mittag; Magdalini Polymenidou; Frederic Rousseau; Joost Schymkowitz; James Shorter; Benjamin Wolozin; Ludo Van Den Bosch; Peter Tompa; Monika Fuxreiter
Journal:  Trends Cell Biol       Date:  2018-03-27       Impact factor: 20.808

5.  Sequence Determinants of Intracellular Phase Separation by Complex Coacervation of a Disordered Protein.

Authors:  Chi W Pak; Martyna Kosno; Alex S Holehouse; Shae B Padrick; Anuradha Mittal; Rustam Ali; Ali A Yunus; David R Liu; Rohit V Pappu; Michael K Rosen
Journal:  Mol Cell       Date:  2016-07-07       Impact factor: 17.970

6.  DisProt: the Database of Disordered Proteins.

Authors:  Megan Sickmeier; Justin A Hamilton; Tanguy LeGall; Vladimir Vacic; Marc S Cortese; Agnes Tantos; Beata Szabo; Peter Tompa; Jake Chen; Vladimir N Uversky; Zoran Obradovic; A Keith Dunker
Journal:  Nucleic Acids Res       Date:  2006-12-01       Impact factor: 16.971

7.  Phase transition of a disordered nuage protein generates environmentally responsive membraneless organelles.

Authors:  Timothy J Nott; Evangelia Petsalaki; Patrick Farber; Dylan Jervis; Eden Fussner; Anne Plochowietz; Timothy D Craggs; David P Bazett-Jones; Tony Pawson; Julie D Forman-Kay; Andrew J Baldwin
Journal:  Mol Cell       Date:  2015-03-05       Impact factor: 17.970

8.  Intrinsically disordered sequences enable modulation of protein phase separation through distributed tyrosine motifs.

Authors:  Yuan Lin; Simon L Currie; Michael K Rosen
Journal:  J Biol Chem       Date:  2017-09-18       Impact factor: 5.157

9.  Formation and Maturation of Phase-Separated Liquid Droplets by RNA-Binding Proteins.

Authors:  Yuan Lin; David S W Protter; Michael K Rosen; Roy Parker
Journal:  Mol Cell       Date:  2015-09-24       Impact factor: 17.970

Review 10.  The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease.

Authors:  M Madan Babu
Journal:  Biochem Soc Trans       Date:  2016-10-15       Impact factor: 5.407

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  28 in total

1.  In vivo liquid-liquid phase separation protects amyloidogenic and aggregation-prone peptides during overexpression in Escherichia coli.

Authors:  Bartosz Gabryelczyk; Reema Alag; Margaret Philips; Kimberly Low; Anandalakshmi Venkatraman; Bhuvaneswari Kannaian; Xiangyan Shi; Markus Linder; Konstantin Pervushin; Ali Miserez
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.725

2.  Adaptable P body physical states differentially regulate bicoid mRNA storage during early Drosophila development.

Authors:  M Sankaranarayanan; Ryan J Emenecker; Elise L Wilby; Marcus Jahnel; Irmela R E A Trussina; Matt Wayland; Simon Alberti; Alex S Holehouse; Timothy T Weil
Journal:  Dev Cell       Date:  2021-10-15       Impact factor: 12.270

3.  Microliter Scale Synthesis of Luciferase-Encapsulated Polymersomes as Artificial Organelles for Optogenetic Modulation of Cardiomyocyte Beating.

Authors:  Hyemin Kim; Jonathan Yeow; Adrian Najer; Worrapong Kit-Anan; Richard Wang; Omar Rifaie-Graham; Chalaisorn Thanapongpibul; Molly M Stevens
Journal:  Adv Sci (Weinh)       Date:  2022-07-28       Impact factor: 17.521

4.  An Introduction to the Stickers-and-Spacers Framework as Applied to Biomolecular Condensates.

Authors:  Garrett M Ginell; Alex S Holehouse
Journal:  Methods Mol Biol       Date:  2023

5.  Tuning the Properties of Protein-Based Polymers Using High-Performance Orthogonal Translation Systems for the Incorporation of Aromatic Non-Canonical Amino Acids.

Authors:  Osher Gueta; Ortal Sheinenzon; Rotem Azulay; Hadas Shalit; Daniela S Strugach; Dagan Hadar; Sigal Gelkop; Anat Milo; Miriam Amiram
Journal:  Front Bioeng Biotechnol       Date:  2022-05-30

Review 6.  The role of liquid-liquid phase separation in regulating enzyme activity.

Authors:  Brian G O'Flynn; Tanja Mittag
Journal:  Curr Opin Cell Biol       Date:  2021-01-24       Impact factor: 8.382

Review 7.  Biophysical studies of phase separation integrating experimental and computational methods.

Authors:  Nicolas L Fawzi; Sapun H Parekh; Jeetain Mittal
Journal:  Curr Opin Struct Biol       Date:  2021-06-15       Impact factor: 7.786

8.  Biomolecular Condensates: Sequence Determinants of Phase Separation, Microstructural Organization, Enzymatic Activity, and Material Properties.

Authors:  Benjamin S Schuster; Roshan Mammen Regy; Elliott M Dolan; Aishwarya Kanchi Ranganath; Nina Jovic; Sagar D Khare; Zheng Shi; Jeetain Mittal
Journal:  J Phys Chem B       Date:  2021-03-04       Impact factor: 3.466

Review 9.  Biological Phase Separation and Biomolecular Condensates in Plants.

Authors:  Ryan J Emenecker; Alex S Holehouse; Lucia C Strader
Journal:  Annu Rev Plant Biol       Date:  2021-03-08       Impact factor: 28.310

Review 10.  Application of Thermoresponsive Intrinsically Disordered Protein Polymers in Nanostructured and Microstructured Materials.

Authors:  Bin Wang; Sai S Patkar; Kristi L Kiick
Journal:  Macromol Biosci       Date:  2021-06-18       Impact factor: 5.859

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