Literature DB >> 34655524

Adaptable P body physical states differentially regulate bicoid mRNA storage during early Drosophila development.

M Sankaranarayanan1, Ryan J Emenecker2, Elise L Wilby3, Marcus Jahnel4, Irmela R E A Trussina4, Matt Wayland3, Simon Alberti4, Alex S Holehouse2, Timothy T Weil5.   

Abstract

Ribonucleoprotein condensates can exhibit diverse physical states in vitro and in vivo. Despite considerable progress, the relevance of condensate physical states for in vivo biological function remains limited. Here, we investigated the physical properties of processing bodies (P bodies) and their impact on mRNA storage in mature Drosophila oocytes. We show that the conserved DEAD-box RNA helicase Me31B forms viscous P body condensates, which adopt an arrested physical state. We demonstrate that structurally distinct proteins and protein-protein interactions, together with RNA, regulate the physical properties of P bodies. Using live imaging and in situ hybridization, we show that the arrested state and integrity of P bodies support the storage of bicoid (bcd) mRNA and that egg activation modulates P body properties, leading to the release of bcd for translation in the early embryo. Together, this work provides an example of how physical states of condensates regulate cellular function in development.
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Drosophila; axis patterning; biomolecular condensates; intrinsically disordered regions; in vivo imaging; mRNA regulation; phase separation; processing bodies; ribonucleoprotein

Mesh:

Substances:

Year:  2021        PMID: 34655524      PMCID: PMC8555633          DOI: 10.1016/j.devcel.2021.09.021

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  115 in total

1.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

Review 2.  P bodies and the control of mRNA translation and degradation.

Authors:  Roy Parker; Ujwal Sheth
Journal:  Mol Cell       Date:  2007-03-09       Impact factor: 17.970

3.  Similar modes of interaction enable Trailer Hitch and EDC3 to associate with DCP1 and Me31B in distinct protein complexes.

Authors:  Felix Tritschler; Ana Eulalio; Sigrun Helms; Steffen Schmidt; Murray Coles; Oliver Weichenrieder; Elisa Izaurralde; Vincent Truffault
Journal:  Mol Cell Biol       Date:  2008-09-02       Impact factor: 4.272

4.  TrackMate: An open and extensible platform for single-particle tracking.

Authors:  Jean-Yves Tinevez; Nick Perry; Johannes Schindelin; Genevieve M Hoopes; Gregory D Reynolds; Emmanuel Laplantine; Sebastian Y Bednarek; Spencer L Shorte; Kevin W Eliceiri
Journal:  Methods       Date:  2016-10-03       Impact factor: 3.608

5.  mRNA poly(A)-tail changes specified by deadenylation broadly reshape translation in Drosophila oocytes and early embryos.

Authors:  Stephen W Eichhorn; Alexander O Subtelny; Iva Kronja; Jamie C Kwasnieski; Terry L Orr-Weaver; David P Bartel
Journal:  Elife       Date:  2016-07-30       Impact factor: 8.140

6.  Changes in bicoid mRNA anchoring highlight conserved mechanisms during the oocyte-to-embryo transition.

Authors:  Timothy T Weil; Richard Parton; Ilan Davis; Elizabeth R Gavis
Journal:  Curr Biol       Date:  2008-07-22       Impact factor: 10.834

Review 7.  Eukaryotic stress granules: the ins and outs of translation.

Authors:  J Ross Buchan; Roy Parker
Journal:  Mol Cell       Date:  2009-12-25       Impact factor: 17.970

8.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

9.  CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Authors:  Alex S Holehouse; Rahul K Das; James N Ahad; Mary O G Richardson; Rohit V Pappu
Journal:  Biophys J       Date:  2017-01-10       Impact factor: 4.033

10.  RNA is a critical element for the sizing and the composition of phase-separated RNA-protein condensates.

Authors:  Marina Garcia-Jove Navarro; Shunnichi Kashida; Racha Chouaib; Sylvie Souquere; Gérard Pierron; Dominique Weil; Zoher Gueroui
Journal:  Nat Commun       Date:  2019-07-19       Impact factor: 14.919

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  2 in total

1.  Dynamic arrest and aging of biomolecular condensates are modulated by low-complexity domains, RNA and biochemical activity.

Authors:  Miriam Linsenmeier; Maria Hondele; Fulvio Grigolato; Eleonora Secchi; Karsten Weis; Paolo Arosio
Journal:  Nat Commun       Date:  2022-05-31       Impact factor: 17.694

2.  P-bodies directly regulate MARF1-mediated mRNA decay in human cells.

Authors:  William R Brothers; Hana Fakim; Sam Kajjo; Marc R Fabian
Journal:  Nucleic Acids Res       Date:  2022-07-22       Impact factor: 19.160

  2 in total

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