Literature DB >> 33684296

Biological Phase Separation and Biomolecular Condensates in Plants.

Ryan J Emenecker1,2,3,4, Alex S Holehouse2,3, Lucia C Strader3,4,5.   

Abstract

A surge in research focused on understanding the physical principles governing the formation, properties, and function of membraneless compartments has occurred over the past decade. Compartments such as the nucleolus, stress granules, and nuclear speckles have been designated as biomolecular condensates to describe their shared property of spatially concentrating biomolecules. Although this research has historically been carried out in animal and fungal systems, recent work has begun to explore whether these same principles are relevant in plants. Effectively understanding and studying biomolecular condensates require interdisciplinary expertise that spans cell biology, biochemistry, and condensed matter physics and biophysics. As such, some involved concepts may be unfamiliar to any given individual. This review focuses on introducing concepts essential to the study of biomolecular condensates and phase separation for biologists seeking to carry out research in this area and further examines aspects of biomolecular condensates that are relevant to plant systems.

Entities:  

Keywords:  biomolecular condensates; membraneless organelles; protein phase separation

Mesh:

Year:  2021        PMID: 33684296      PMCID: PMC8221409          DOI: 10.1146/annurev-arplant-081720-015238

Source DB:  PubMed          Journal:  Annu Rev Plant Biol        ISSN: 1543-5008            Impact factor:   28.310


  138 in total

Review 1.  The nucleolus.

Authors:  Thoru Pederson
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-03-01       Impact factor: 10.005

2.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

Review 3.  DNA damage foci: Meaning and significance.

Authors:  Kai Rothkamm; Stephen Barnard; Jayne Moquet; Michele Ellender; Zohaib Rana; Susanne Burdak-Rothkamm
Journal:  Environ Mol Mutagen       Date:  2015-03-12       Impact factor: 3.216

Review 4.  Sequence-encoded material properties dictate the structure and function of nuclear bodies.

Authors:  Stephanie C Weber
Journal:  Curr Opin Cell Biol       Date:  2017-03-23       Impact factor: 8.382

5.  Composition-dependent thermodynamics of intracellular phase separation.

Authors:  Joshua A Riback; Lian Zhu; Mylene C Ferrolino; Michele Tolbert; Diana M Mitrea; David W Sanders; Ming-Tzo Wei; Richard W Kriwacki; Clifford P Brangwynne
Journal:  Nature       Date:  2020-05-06       Impact factor: 49.962

Review 6.  Prion-like low-complexity sequences: Key regulators of protein solubility and phase behavior.

Authors:  Titus M Franzmann; Simon Alberti
Journal:  J Biol Chem       Date:  2018-06-19       Impact factor: 5.157

7.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

Review 8.  Composition and function of P bodies in Arabidopsis thaliana.

Authors:  Luis D Maldonado-Bonilla
Journal:  Front Plant Sci       Date:  2014-05-14       Impact factor: 5.753

9.  Ligand effects on phase separation of multivalent macromolecules.

Authors:  Kiersten M Ruff; Furqan Dar; Rohit V Pappu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-09       Impact factor: 11.205

10.  D²P²: database of disordered protein predictions.

Authors:  Matt E Oates; Pedro Romero; Takashi Ishida; Mohamed Ghalwash; Marcin J Mizianty; Bin Xue; Zsuzsanna Dosztányi; Vladimir N Uversky; Zoran Obradovic; Lukasz Kurgan; A Keith Dunker; Julian Gough
Journal:  Nucleic Acids Res       Date:  2012-11-29       Impact factor: 16.971

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  10 in total

Review 1.  Plant transcription factors - being in the right place with the right company.

Authors:  Lucia Strader; Dolf Weijers; Doris Wagner
Journal:  Curr Opin Plant Biol       Date:  2021-11-29       Impact factor: 7.834

2.  Evolved interactions stabilize many coexisting phases in multicomponent liquids.

Authors:  David Zwicker; Liedewij Laan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-06       Impact factor: 12.779

3.  Regulation of AUXIN RESPONSE FACTOR condensation and nucleo-cytoplasmic partitioning.

Authors:  Hongwei Jing; David A Korasick; Ryan J Emenecker; Nicholas Morffy; Edward G Wilkinson; Samantha K Powers; Lucia C Strader
Journal:  Nat Commun       Date:  2022-07-11       Impact factor: 17.694

4.  Hysteresis in PHYTOCHROME-INTERACTING FACTOR 4 and EARLY-FLOWERING 3 dynamics dominates warm daytime memory in Arabidopsis.

Authors:  Germán Murcia; Cristina Nieto; Romina Sellaro; Salomé Prat; Jorge J Casal
Journal:  Plant Cell       Date:  2022-05-24       Impact factor: 12.085

5.  The emerging role of biomolecular condensates in plant immunity.

Authors:  Wei Wang; Yangnan Gu
Journal:  Plant Cell       Date:  2022-04-26       Impact factor: 12.085

Review 6.  Liquid-Liquid Phase Separation Phenomenon on Protein Sorting Within Chloroplasts.

Authors:  Canhui Zheng; Xiumei Xu; Lixin Zhang; Dandan Lu
Journal:  Front Physiol       Date:  2021-12-24       Impact factor: 4.566

7.  Light-triggered and phosphorylation-dependent 14-3-3 association with NON-PHOTOTROPIC HYPOCOTYL 3 is required for hypocotyl phototropism.

Authors:  Lea Reuter; Tanja Schmidt; Prabha Manishankar; Christian Throm; Jutta Keicher; Andrea Bock; Irina Droste-Borel; Claudia Oecking
Journal:  Nat Commun       Date:  2021-10-21       Impact factor: 14.919

Review 8.  Signaling Mechanisms by Arabidopsis Cryptochromes.

Authors:  Jathish Ponnu; Ute Hoecker
Journal:  Front Plant Sci       Date:  2022-02-28       Impact factor: 5.753

9.  Heterotypic transcriptional condensates formed by prion-like paralogous proteins canalize flowering transition in tomato.

Authors:  Xiaozhen Huang; Nan Xiao; Yupan Zou; Yue Xie; Lingli Tang; Yueqin Zhang; Yuan Yu; Yiting Li; Cao Xu
Journal:  Genome Biol       Date:  2022-03-14       Impact factor: 13.583

10.  IbMYB308, a Sweet Potato R2R3-MYB Gene, Improves Salt Stress Tolerance in Transgenic Tobacco.

Authors:  Chong Wang; Lianjun Wang; Jian Lei; Shasha Chai; Xiaojie Jin; Yuyan Zou; Xiaoqiong Sun; Yuqin Mei; Xianliang Cheng; Xinsun Yang; Chunhai Jiao; Xiaohai Tian
Journal:  Genes (Basel)       Date:  2022-08-18       Impact factor: 4.141

  10 in total

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