Literature DB >> 26412307

Formation and Maturation of Phase-Separated Liquid Droplets by RNA-Binding Proteins.

Yuan Lin1, David S W Protter2, Michael K Rosen3, Roy Parker4.   

Abstract

Eukaryotic cells possess numerous dynamic membrane-less organelles, RNP granules, enriched in RNA and RNA-binding proteins containing disordered regions. We demonstrate that the disordered regions of key RNP granule components and the full-length granule protein hnRNPA1 can phase separate in vitro, producing dynamic liquid droplets. Phase separation is promoted by low salt concentrations or RNA. Over time, the droplets mature to more stable states, as assessed by slowed fluorescence recovery after photobleaching and resistance to salt. Maturation often coincides with formation of fibrous structures. Different disordered domains can co-assemble into phase-separated droplets. These biophysical properties demonstrate a plausible mechanism by which interactions between disordered regions, coupled with RNA binding, could contribute to RNP granule assembly in vivo through promoting phase separation. Progression from dynamic liquids to stable fibers may be regulated to produce cellular structures with diverse physiochemical properties and functions. Misregulation could contribute to diseases involving aberrant RNA granules.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26412307      PMCID: PMC4609299          DOI: 10.1016/j.molcel.2015.08.018

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  44 in total

1.  Protein aggregation behavior regulates cyclin transcript localization and cell-cycle control.

Authors:  Changhwan Lee; Huaiying Zhang; Amy E Baker; Patricia Occhipinti; Mark E Borsuk; Amy S Gladfelter
Journal:  Dev Cell       Date:  2013-06-13       Impact factor: 12.270

2.  Conserved interdomain linker promotes phase separation of the multivalent adaptor protein Nck.

Authors:  Sudeep Banjade; Qiong Wu; Anuradha Mittal; William B Peeples; Rohit V Pappu; Michael K Rosen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

3.  Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization.

Authors:  Amandine Molliex; Jamshid Temirov; Jihun Lee; Maura Coughlin; Anderson P Kanagaraj; Hong Joo Kim; Tanja Mittag; J Paul Taylor
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

Review 4.  Altered ribostasis: RNA-protein granules in degenerative disorders.

Authors:  Mani Ramaswami; J Paul Taylor; Roy Parker
Journal:  Cell       Date:  2013-08-15       Impact factor: 41.582

5.  Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function.

Authors:  J Ross Buchan; Regina-Maria Kolaitis; J Paul Taylor; Roy Parker
Journal:  Cell       Date:  2013-06-20       Impact factor: 41.582

Review 6.  The role of disordered protein regions in the assembly of decapping complexes and RNP granules.

Authors:  Stefanie Jonas; Elisa Izaurralde
Journal:  Genes Dev       Date:  2013-12-15       Impact factor: 11.361

7.  Phase transitions of multivalent proteins can promote clustering of membrane receptors.

Authors:  Sudeep Banjade; Michael K Rosen
Journal:  Elife       Date:  2014-10-16       Impact factor: 8.140

8.  In vitro reconstitution of a cellular phase-transition process that involves the mRNA decapping machinery.

Authors:  Simon A Fromm; Julia Kamenz; Erik R Nöldeke; Ancilla Neu; Georg Zocher; Remco Sprangers
Journal:  Angew Chem Int Ed Engl       Date:  2014-05-26       Impact factor: 15.336

9.  FUS is sequestered in nuclear aggregates in ALS patient fibroblasts.

Authors:  Jacob C Schwartz; Elaine R Podell; Steve S W Han; James D Berry; Kevin C Eggan; Thomas R Cech
Journal:  Mol Biol Cell       Date:  2014-07-09       Impact factor: 4.138

10.  Regulation of RNA granule dynamics by phosphorylation of serine-rich, intrinsically disordered proteins in C. elegans.

Authors:  Jennifer T Wang; Jarrett Smith; Bi-Chang Chen; Helen Schmidt; Dominique Rasoloson; Alexandre Paix; Bramwell G Lambrus; Deepika Calidas; Eric Betzig; Geraldine Seydoux
Journal:  Elife       Date:  2014-12-23       Impact factor: 8.140

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  563 in total

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Authors:  Sarah E Cabral; Kimberly L Mowry
Journal:  Curr Top Dev Biol       Date:  2020-03-09       Impact factor: 4.897

2.  Molecular networks: Protein droplets in the spotlight.

Authors:  Paulina Strzyz
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09-30       Impact factor: 94.444

3.  A quantitative inventory of yeast P body proteins reveals principles of composition and specificity.

Authors:  Wenmin Xing; Denise Muhlrad; Roy Parker; Michael K Rosen
Journal:  Elife       Date:  2020-06-19       Impact factor: 8.140

4.  Defining the RNA interactome by total RNA-associated protein purification.

Authors:  Vadim Shchepachev; Stefan Bresson; Christos Spanos; Elisabeth Petfalski; Lutz Fischer; Juri Rappsilber; David Tollervey
Journal:  Mol Syst Biol       Date:  2019-04-08       Impact factor: 11.429

5.  Tug of War between Condensate Phases in a Minimal Macromolecular System.

Authors:  Archishman Ghosh; Xiaojia Zhang; Huan-Xiang Zhou
Journal:  J Am Chem Soc       Date:  2020-05-04       Impact factor: 15.419

6.  Phosphorylation-Mediated Clearance of Amyloid-like Assemblies in Meiosis.

Authors:  Kayla Carpenter; Rachel Brietta Bell; Julius Yunus; Angelika Amon; Luke Edwin Berchowitz
Journal:  Dev Cell       Date:  2018-05-07       Impact factor: 12.270

7.  Phase Separation of Toxic Dipeptide Repeat Proteins Related to C9orf72 ALS/FTD.

Authors:  Hamidreza Jafarinia; Erik van der Giessen; Patrick R Onck
Journal:  Biophys J       Date:  2020-07-16       Impact factor: 4.033

Review 8.  The Role of RNA in Biological Phase Separations.

Authors:  Marta M Fay; Paul J Anderson
Journal:  J Mol Biol       Date:  2018-05-10       Impact factor: 5.469

9.  Targeting of NF-κB to Dendritic Spines Is Required for Synaptic Signaling and Spine Development.

Authors:  Erica C Dresselhaus; Matthew C H Boersma; Mollie K Meffert
Journal:  J Neurosci       Date:  2018-03-19       Impact factor: 6.167

10.  Inhibition of Axon Regeneration by Liquid-like TIAR-2 Granules.

Authors:  Matthew G Andrusiak; Panid Sharifnia; Xiaohui Lyu; Zhiping Wang; Andrea M Dickey; Zilu Wu; Andrew D Chisholm; Yishi Jin
Journal:  Neuron       Date:  2019-08-01       Impact factor: 17.173

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