| Literature DB >> 32699404 |
Yixin Gao1, Ting Wang1, Xinghao Yu1, Huashuo Zhao2,3, Ping Zeng4,5.
Abstract
We employed Mendelian randomization (MR) to evaluate the causal relationship between leukocyte telomere length (LTL) and amyotrophic lateral sclerosis (ALS) with summary statistics from genome-wide association studies (n = ~ 38,000 for LTL and ~ 81,000 for ALS in the European population; n = ~ 23,000 for LTL and ~ 4,100 for ALS in the Asian population). We further evaluated mediation roles of lipids in the pathway from LTL to ALS. The odds ratio per standard deviation decrease of LTL on ALS was 1.10 (95% CI 0.93-1.31, p = 0.274) in the European population and 0.75 (95% CI 0.53-1.07, p = 0.116) in the Asian population. This null association was also detected between LTL and frontotemporal dementia in the European population. However, we found that an indirect effect of LTL on ALS might be mediated by low density lipoprotein (LDL) or total cholesterol (TC) in the European population. These results were robust against extensive sensitivity analyses. Overall, our MR study did not support the direct causal association between LTL and the ALS risk in neither population, but provided suggestive evidence for the mediation role of LDL or TC on the influence of LTL and ALS in the European population.Entities:
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Year: 2020 PMID: 32699404 PMCID: PMC7376149 DOI: 10.1038/s41598-020-68848-9
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Estimated effect sizes of shorter LTL on neurodegenerative diseases in previous studies.
| NDD | OR/HR (95% CI, | Country | References | |
|---|---|---|---|---|
| PD | 0.70 (0.38–1.28, 0.246) | 956/1,284 | EUR and Asian | [ |
| PD | 0.91 (0.71–1.16, 0.450) | 96/172 | USA | [ |
| PD | 0.99 (0.77–1.27, 0.535) | 131/115 | Finland | [ |
| PD | 0.99 (0.88–1.12, 0.875) | 408/809 | USA | [ |
| PD | 1.30 (0.76–2.17, 0.340) | 28/27 | Japan | [ |
| ALS | 0.89 (0.68–1.16, 0.400) | 6,100/7,125 | EUR | [ |
| ALS | 0.92 (0.87–0.97, 0.008) | 1,241/335 | UK | [ |
| AD | 1.03 (1.01–1.05, 0.012) | 71,880/383,378 | EUR | [ |
| AD | 1.05 (1.01–1.09, 0.010) | 71,880/383,378 | EUR | [ |
| AD | 1.19 (1.02–1.41, 0.030) | 17,008/37,154 | EUR | [ |
| AD | 1.35 (1.12–1.67, 0.002) | 25,580/48,466 | EUR | [ |
| AD | 1.35 (1.11–1.67, 0.003) | 25,580/48,466 | EUR | [ |
| AD | 2.70 (1.69–4.17, 1.47E−05) | 860/2,022 | Multiethnic | [ |
| Dementia | 1.20 (1.00–1.47, 0.058) | 190/1,469 | Multiethnic | [ |
| Dementia | 5.26 (1.85–14.3, 0.002) | 20/151 | UK | [ |
NDD neurodegenerative disease, PD Parkinson’s disease, ALS amyotrophic lateral sclerosis, AD Alzheimer’s disease, OR odds ratio, HR hazard ratio, CI confidence internal, p p value, N sample size, EUR European.
Summary information of instrumental variables for LTL and ALS in the European population.
| SNP | GENE | CHR | BP | A1/A2 | LTL | ALS | PVE | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BETA | SE | BETA | SE | |||||||||||
| rs11125529 | 2 | 54,329,370 | C/A | − 0.056 | 0.010 | 4.48E−08 | 37,653 | − 0.007 | 0.020 | 0.730 | 80,610 | 8.32E−04 | 31.4 | |
| rs10936599 | 3 | 170,974,795 | T/C | − 0.079 | 0.008 | 2.54E−31 | 37,669 | 0.003 | 0.016 | 0.839 | 80,610 | 3.89E−03 | 147.0 | |
| rs7675998 | 4 | 164,227,270 | A/G | − 0.074 | 0.009 | 4.35E−16 | 34,694 | − 0.005 | 0.016 | 0.747 | 80,610 | 1.94E−03 | 67.6 | |
| rs2736100 | 5 | 1,339,516 | A/C | − 0.078 | 0.009 | 4.38E−19 | 25,842 | 0.010 | 0.014 | 0.493 | 80,610 | 2.90E−03 | 75.1 | |
| rs9420907 | 10 | 105,666,455 | A/C | − 0.069 | 0.010 | 6.90E−11 | 37,653 | 0.050 | 0.019 | 0.011 | 80,610 | 1.26E−03 | 47.6 | |
| rs8105767 | 19 | 22,007,281 | A/G | − 0.048 | 0.008 | 1.11E−09 | 37,499 | 0.006 | 0.015 | 0.683 | 80,610 | 9.59E−04 | 36.0 | |
| rs755017 | 20 | 61,892,066 | A/G | − 0.062 | 0.011 | 6.71E−09 | 37,113 | − 0.005 | 0.022 | 0.831 | 80,610 | 8.55E−04 | 31.8 | |
SNP the label of single-nucleotide polymorphism that served as instrumental variable, CHR chromosome, BP base position, A1 effect allele, indicates the allele that is associated with shorter LTL, explaining why all the BETA estimates are negative, A2 alternative allele, BETA SNP effect size, SE standard error of the SNP effect size, p and N are respectively the p value and sample size, PVE proportion of variance explained by the SNP (i.e. [86], where and are the estimated effect size and variance for instrument i; F: F statistic (i.e. [87,88], where N is the sample size for instrument i and k is the number of instruments). Both of PVE and F statistic are calculated to validate the issue of weak instruments.
GWAS data sets used in our MR analysis in the present study.
| Traits | Pop | Data source | ||
|---|---|---|---|---|
| ALS | EUR | 80,610 (20,806/59,804) | AVS[ | |
| HDL | EUR | 85/87 | 93,561 | GLGC[ |
| LDL | EUR | 78/78 | 89,138 | GLGC[ |
| TC | EUR | 86/86 | 93,845 | GLGC[ |
| TG | EUR | 53/54 | 90,263 | GLGC[ |
| LTL | EUR | 7/7 | 37,684 | ENGAGE[ |
| FTD | EUR | 12,928 (3,526/9,402) | IFGC[ | |
| HDL | EUR | 79/87 | 93,561 | GLGC[ |
| LDL | EUR | 66/78 | 89,138 | GLGC[ |
| TC | EUR | 76/86 | 93,845 | GLGC[ |
| TG | EUR | 47/54 | 90,263 | GLGC[ |
| LTL | EUR | 6/7 | 37,684 | ENGAGE[ |
| ALS | Asian | 4,084 (1,234/2,850) | Benyamin[ | |
| HDL | Asian | 30/31 | 70,657 | Kanai[ |
| LDL | Asian | 21/22 | 72,866 | Kanai[ |
| TC | Asian | 31/32 | 128,305 | Kanai[ |
| TG | Asian | 26/26 | 105,597 | Kanai[ |
| LTL | Asian | 8/10 | 23,096 | SCHS[ |
Here k1 is the final number of instruments employed in the analysis while k0 is the number of candidate instruments.
ALS amyotrophic lateral sclerosis, FTD frontotemporal dementia, HDL high density lipoprotein, LDL low density lipoprotein, TC total cholesterol, TG triglycerides, LTL leukocyte telomere length, Pop population, EUR European, AVS the ALS Variant Server, IFGC International FTD-Genomics Consortium, GLGC Global Lipids Genetics Consortium, ENGAGE European Network for Genetic and Genomic Epidemiology, SCHS Singapore Chinese Health Study.
Association of LTL with the risk of ALS or FTD in the European and Asian populations.
| Method | ALS-european | FTD-european | ALS-asian |
|---|---|---|---|
| OR (95% CI, | OR (95% CI, | OR (95% CI, | |
| IVW-random | 1.10 (0.92–1.32, 0.284) | 0.81 (0.44–1.48, 0.498) | 0.75 (0.53–1.07, 0.116) |
| IVW-fixed | 1.10 (0.93–1.31, 0.274) | 0.81 (0.44–1.48, 0.498) | 0.75 (0.53–1.07, 0.116) |
| MR-Egger | 1.02 (0.32–3.29, 0.964) | 0.40 (0.01–14.71, 0.516) | 0.61 (0.24–1.56, 0.241) |
| Weighted Median | 1.06 (0.85–1.32, 0.624) | 0.73 (0.35–1.52, 0.400) | 0.67 (0.43–1.05, 0.082) |
| Likelihood | 1.10 (0.92–1.32, 0.290) | 0.81 (0.44–1.48, 0.496) | 0.75 (0.53–1.07, 0.115) |
| GSMR | 1.10 (0.93–1.31, 0.274) | 0.81 (0.44–1.48, 0.498) | 0.73 (0.51–1.05, 0.086)a |
The intercept of the MR-Egger regression is 0.006 (95% CI − 0.079–0.090, p = 0.872), 0.055 (95% CI − 0.214–0.323, p = 0.601) or 0.026 (95% CI − 0.076–0.128, p = 0.552), respectively.
aSeven instruments were finally employed because the genotype of rs41309367 on gene RTEL1 was missing in the 1,000 Genomes Project.
Figure 1Relationship between effect sizes on LTL and ALS/FTD for SNPs served as instrumental variables. Results are shown for seven SNPs of ALS (a) and six SNPs of FTD (b) in the European population. Results are also displayed for eight SNPs of ALS in the Asian population (c). In each panel, horizontal/vertical lines represent the 95% confidence intervals.
Three directions of the relation with exposure to mediator, mediator to outcome and exposure to outcome.
| Pop | Exposure | Mediator | SE ( | Mediator | Outcome | SE ( | Exposure | Outcome | SE ( | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EUR | LTL | HDL | 0.082 | 0.029 | 0.005 | HDL | ALS | 0.013 | 0.039 | 0.743 | LTL | ALS | 0.097 | 0.089 | 0.274 |
| LTL | ALS | 0.097 | 0.089 | 0.274 | |||||||||||
| LTL | ALS | 0.097 | 0.089 | 0.274 | |||||||||||
| LTL | TG | − 0.095 | 0.028 | 0.001 | TG | ALS | − 0.045 | 0.044 | 0.309 | LTL | ALS | 0.097 | 0.089 | 0.274 | |
| LTL | HDL | 0.082 | 0.029 | 0.005 | HDL | FTD | − 0.035 | 0.125 | 0.786 | LTL | FTD | − 0.208 | 0.308 | 0.498 | |
| LTL | LDL | − 0.060 | 0.031 | 0.057 | LDL | FTD | − 0.139 | 0.107 | 0.196 | LTL | FTD | − 0.208 | 0.308 | 0.498 | |
| LTL | TC | − 0.059 | 0.031 | 0.052 | TC | FTD | − 0.142 | 0.104 | 0.172 | LTL | FTD | − 0.208 | 0.308 | 0.498 | |
| LTL | TG | − 0.095 | 0.028 | 0.001 | TG | FTD | − 0.018 | 0.140 | 0.898 | LTL | FTD | − 0.208 | 0.308 | 0.498 | |
| Asian | LTL | HDL | − 0.020 | 0.022 | 0.366 | HDL | ALS | 0.108 | 0.129 | 0.404 | LTL | ALS | − 0.284 | 0.180 | 0.116 |
| LTL | LDL | 0.003 | 0.023 | 0.898 | LDL | ALS | − 0.234 | 0.131 | 0.073 | LTL | ALS | − 0.284 | 0.180 | 0.116 | |
| LTL | TC | − 0.002 | 0.014 | 0.911 | TC | ALS | − 0.276 | 0.214 | 0.197 | LTL | ALS | − 0.284 | 0.180 | 0.116 | |
| LTL | TG | 0.018 | 0.014 | 0.214 | TG | ALS | 0.160 | 0.195 | 0.414 | LTL | ALS | − 0.284 | 0.180 | 0.116 |
Pop population, EUR European, LTL leukocyte telomere length, HDL high density lipoprotein, LDL low density lipoprotein, TC total cholesterol, TG triglycerides, ALS amyotrophic lateral sclerosis, FTD frontotemporal dementia, p p value,
The effect size and the standard error of the relationship with Exposure to Mediator, Mediator to Outcome and Exposure to Outcome are denoted as a, b, c and SE(a), SE(b), SE(c), respectively.
The marginally significant causal association between LTL and LDL/TC and the significant causal association between LDL/TC and ALS in the European population are shown in bold.
Mediation analysis of the role between telomere length, lipids and ALS/FTD.
| Pop | Exposure | Mediator | Outcome | 95% CI | |||
|---|---|---|---|---|---|---|---|
| EUR | LTL | HDL | ALS | 0.001 (0.003) | − 0.005–0.007 | 0.354 | 0.724 |
| LTL | TG | ALS | 0.004 (0.004) | − 0.004–0.012 | 1.021 | 0.307 | |
| LTL | HDL | FTD | − 0.003 (0.010) | − 0.022–0.016 | − 0.298 | 0.766 | |
| LTL | LDL | FTD | 0.008 (0.007) | − 0.005–0.022 | 1.194 | 0.232 | |
| LTL | TC | FTD | 0.008 (0.007) | − 0.005–0.022 | 1.227 | 0.220 | |
| LTL | TG | FTD | 0.002 (0.013) | − 0.023–0.027 | 0.134 | 0.893 | |
| Asian | LTL | HDL | ALS | − 0.002 (0.002) | − 0.006–0.002 | − 1.048 | 0.295 |
| LTL | LDL | ALS | − 0.001 (0.004) | − 0.009–0.008 | − 0.157 | 0.875 | |
| LTL | TC | ALS | 0.001 (0.002) | − 0.004–0.005 | 0.223 | 0.824 | |
| LTL | TG | ALS | 0.003 (0.003) | − 0.003–0.009 | 0.916 | 0.360 |
Pop population, EUR European, LTL leukocyte telomere length, HDL high density lipoprotein, LDL low density lipoprotein, TC total cholesterol, TG triglycerides, ALS amyotrophic lateral sclerosis, FTD frontotemporal dementia, ab the mediation effect, S standard error of the mediation effect, CI, Z and p represent confidence internal, Z statistic and p value, respectively.
The marginally significant mediated effect of LTL on the risk of ALS by LDL or TC are shown in bold.
Figure 2Statistical power calculation for the causal effect of LTL on ALS estimated with the method proposed in[64]. In the calculation, the total phenotypic variance explained by instrumental variables was 1.26% and the proportion of ALS cases varied from 0.1 to 0.5, the significance level was 0.05, the sample size was 20,000, 37,684, 80,610 or 100,000, and the OR = 1.10 or 1.20.