| Literature DB >> 31354785 |
Ping Zeng1, Xiang Zhou2,3.
Abstract
Purpose: Birth weight has a profound long-term impact on individual's predisposition to various diseases at adulthood-a hypothesis commonly referred to as the fetal origins of adult diseases. However, it is not fully clear to what extent the fetal origins of adult diseases hypothesis holds and it is also not completely known what types of adult diseases are causally affected by birth weight. Materials and methods: Mendelian randomization using multiple genetic instruments associated with birth weight was performed to explore the causal relationship between birth weight and adult diseases. The causal relationship between birth weight and 21 adult diseases as well as 38 other complex traits was examined based on data collected from 37 large-scale genome-wide association studies with up to 340,000 individuals of European ancestry. Causal effects of birth weight were estimated using inverse-variance weighted methods. The identified causal relationships between birth weight and adult diseases were further validated through extensive sensitivity analyses, bias calculation, and simulations.Entities:
Keywords: Mendelian randomization; adult diseases; birth weight; causal association; coronary artery disease; genome wide association study; myocardial infarction; type 2 diabetes
Year: 2019 PMID: 31354785 PMCID: PMC6635582 DOI: 10.3389/fgene.2019.00618
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
Figure 1Graphical illustration of Mendelian randomization (MR) analysis. Arrows or dot lines represent the presence or absence of associations, respectively. The MR analysis estimates the causal effect of birth weight to adult disease risk in the presence of various measured and unmeasured confounding factors by carefully selecting single nucleotide polymorphisms (SNPs) that are associated with birth weight to serve as instrumental variables. Valid MR requires these selected SNPs to satisfy three conditions: selected SNPs are strongly associated with birth weight (condition i); selected SNPs are not associated with any known or unknown confounders that are associated with both birth weight and disease (condition ii); selected SNPs are independent of adult disease conditional on birth weight (condition iii). Note that the effects of instrumental variables (G) on the exposure of interest (x) may be indirect and mediated through mediator variables. Exemplary traits include BMI (body mass index), T2D (type 2 diabetes), and CAD (coronary artery disease). The notations in the figure are defined further in .
Summary information for the 47 autosomal SNPs that are used as instrumental variables in the MR analysis.
| Chr | SNP | Position | Gene | Allele | MAF | BETA | SE |
|
| PVE |
|
|---|---|---|---|---|---|---|---|---|---|---|---|
| 7 | rs138715366 | 44,246,271 |
| T/C | 0.01 | −0.2412 | 0.0229 | 7.20E−26 | 132,343 | 8.38E−04 | 110.99 |
| 17 | rs144843919 | 29,037,339 |
| A/G | 0.04 | −0.0660 | 0.0116 | 1.40E−08 | 121,357 | 2.67E−04 | 32.41 |
| 3 | rs900399 | 156,798,732 |
| G/A | 0.39 | −0.0523 | 0.0039 | 2.20E−41 | 143,663 | 1.25E−03 | 179.80 |
| 22 | rs41311445 | 42,070,374 |
| C/A | 0.10 | −0.0445 | 0.0066 | 1.60E−11 | 135,729 | 3.35E−04 | 45.48 |
| 6 | rs35261542 | 20,675,792 |
| A/C | 0.27 | −0.0444 | 0.0041 | 4.40E−27 | 143,667 | 8.16E−04 | 117.33 |
| 2 | rs7575873 | 23,962,647 |
| G/A | 0.12 | −0.0384 | 0.0057 | 1.20E−11 | 139,425 | 3.25E−04 | 45.33 |
| 6 | rs10872678 | 152,039,964 |
| C/T | 0.28 | −0.0375 | 0.0041 | 6.90E−20 | 143,672 | 5.82E−04 | 83.66 |
| 21 | rs2229742 | 16,339,172 |
| C/G | 0.13 | −0.0360 | 0.0060 | 2.20E−09 | 143,672 | 2.51E−04 | 36.07 |
| 4 | rs4144829 | 17,903,654 |
| T/C | 0.73 | −0.0341 | 0.0042 | 5.30E−16 | 139,426 | 4.73E−04 | 65.98 |
| 8 | rs13266210 | 41,533,514 |
| G/A | 0.21 | −0.0308 | 0.0045 | 1.30E−11 | 139,429 | 3.36E−04 | 46.86 |
| 6 | rs1187118 | 34,169,020 |
| T/A | 0.83 | −0.0299 | 0.0051 | 3.60E−09 | 137,043 | 2.51E−04 | 34.41 |
| 10 | rs2497304 | 94,492,716 |
| T/C | 0.48 | −0.0282 | 0.0037 | 2.60E−14 | 143,673 | 4.04E−04 | 58.07 |
| 9 | rs7854962 | 96,900,505 |
| G/C | 0.22 | −0.0279 | 0.0046 | 1.90E−09 | 139,424 | 2.64E−04 | 36.82 |
| 5 | rs854037 | 57,091,783 |
| G/A | 0.19 | −0.0268 | 0.0048 | 2.20E−08 | 139,429 | 2.24E−04 | 31.24 |
| 7 | rs11765649 | 23,479,013 |
| C/T | 0.25 | −0.0267 | 0.0043 | 5.80E−10 | 139,428 | 2.76E−04 | 38.49 |
| 20 | rs28530618 | 31,275,581 |
| G/A | 0.51 | −0.0261 | 0.0038 | 7.70E−12 | 138,162 | 3.41E−04 | 47.13 |
| 15 | rs7402982 | 99,193,269 |
| G/A | 0.57 | −0.0232 | 0.0039 | 2.30E−09 | 139,423 | 2.54E−04 | 35.42 |
| 8 | rs12543725 | 142,247,979 |
| A/G | 0.41 | −0.0231 | 0.0038 | 1.20E−09 | 139,431 | 2.65E−04 | 36.96 |
| 7 | rs798498 | 2,795,882 |
| G/T | 0.31 | −0.0229 | 0.0040 | 1.30E−08 | 139,427 | 2.35E−04 | 32.77 |
| 3 | rs2168443 | 46,947,087 |
| A/T | 0.62 | −0.0228 | 0.0039 | 3.50E−09 | 139,426 | 2.45E−04 | 34.17 |
| 15 | rs12906125 | 91,427,612 |
| A/G | 0.32 | −0.0228 | 0.0040 | 1.70E−08 | 141,281 | 2.30E−04 | 32.50 |
| 22 | rs134594 | 29,468,456 |
| T/C | 0.65 | −0.0227 | 0.0040 | 1.00E−08 | 137,340 | 2.34E−04 | 32.14 |
| 13 | rs7998537 | 40,662,742 |
| A/G | 0.32 | −0.0222 | 0.0040 | 3.90E−08 | 139,429 | 2.21E−04 | 30.82 |
| 3 | rs10935733 | 148,622,968 |
| C/T | 0.59 | −0.0221 | 0.0039 | 9.20E−09 | 139,426 | 2.30E−04 | 32.07 |
| 12 | rs2306547 | 26,877,885 |
| T/C | 0.46 | −0.0211 | 0.0037 | 1.80E−08 | 139,432 | 2.33E−04 | 32.49 |
| 9 | rs1411424 | 113,892,963 |
| A/G | 0.52 | 0.0212 | 0.0038 | 2.20E−08 | 139,428 | 2.23E−04 | 31.10 |
| 6 | rs9368777 | 33,788,637 |
| C/G | 0.58 | 0.0215 | 0.0038 | 2.20E−08 | 135,709 | 2.36E−04 | 32.03 |
| 17 | rs72833480 | 45,964,861 |
| A/G | 0.29 | 0.0226 | 0.0041 | 4.60E−08 | 139,426 | 2.18E−04 | 30.40 |
| 20 | rs6040076 | 10,658,882 |
| C/G | 0.49 | 0.0231 | 0.0039 | 2.00E−09 | 139,424 | 2.52E−04 | 35.14 |
| 16 | rs28415607 | 19,993,015 |
| C/T | 0.25 | 0.0233 | 0.0043 | 5.00E−08 | 143,660 | 2.04E−04 | 29.31 |
| 20 | rs6016377 | 39,172,728 |
| T/C | 0.43 | 0.0239 | 0.0039 | 9.50E−10 | 139,425 | 2.69E−04 | 37.51 |
| 5 | rs2946179 | 157,886,627 |
| C/T | 0.73 | 0.0240 | 0.0042 | 1.30E−08 | 143,666 | 2.27E−04 | 32.62 |
| 4 | rs2131354 | 145,599,908 |
| A/G | 0.53 | 0.0259 | 0.0037 | 4.10E−12 | 139,431 | 3.51E−04 | 48.96 |
| 1 | rs3753639 | 154,986,091 |
| C/T | 0.24 | 0.0306 | 0.0045 | 7.30E−12 | 138,162 | 3.35E−04 | 46.30 |
| 17 | rs113086489 | 7,171,356 |
| T/C | 0.56 | 0.0307 | 0.0038 | 9.10E−16 | 139,426 | 4.68E−04 | 65.28 |
| 1 | rs72480273 | 161,644,871 |
| C/A | 0.17 | 0.0313 | 0.0051 | 8.00E−10 | 138,380 | 2.72E−04 | 37.65 |
| 1 | rs2473248 | 22,536,643 |
| C/T | 0.87 | 0.0325 | 0.0057 | 1.00E−08 | 139,428 | 2.33E−04 | 32.49 |
| 13 | rs1819436 | 78,580,283 |
| C/T | 0.87 | 0.0329 | 0.0057 | 6.30E−09 | 138,979 | 2.40E−04 | 33.36 |
| 9 | rs10818797 | 126,020,405 |
| C/T | 0.14 | 0.0345 | 0.0054 | 1.20E−10 | 139,427 | 2.93E−04 | 40.86 |
| 10 | rs740746 | 115,792,787 |
| A/G | 0.73 | 0.0364 | 0.0042 | 3.80E−18 | 143,672 | 5.23E−04 | 75.18 |
| 10 | rs79237883 | 104,940,946 |
| C/T | 0.08 | 0.0371 | 0.0067 | 3.50E−08 | 143,666 | 2.13E−04 | 30.61 |
| 12 | rs7964361 | 102,994,878 |
| A/G | 0.09 | 0.0391 | 0.0067 | 4.70E−09 | 139,428 | 2.44E−04 | 34.03 |
| 3 | rs11719201 | 123,068,744 |
| T/C | 0.23 | 0.0463 | 0.0044 | 2.40E−26 | 143,670 | 7.70E−04 | 110.71 |
| 2 | rs17034876 | 46,484,310 |
| T/C | 0.70 | 0.0471 | 0.0042 | 2.60E−29 | 134,460 | 9.34E−04 | 125.70 |
| 11 | rs72851023 | 2,130,620 |
| T/C | 0.07 | 0.0476 | 0.0075 | 2.90E−10 | 135,776 | 2.97E−04 | 40.34 |
| 7 | rs111778406 | 72,957,570 |
| G/A | 0.07 | 0.0492 | 0.0075 | 5.80E−11 | 140,932 | 3.05E−04 | 43.00 |
| 9 | rs3780573 | 98,239,503 |
| A/G | 0.10 | 0.0555 | 0.0064 | 7.00E−18 | 134,750 | 5.58E−04 | 75.23 |
These SNPs are associated with birth weight at the genome-wide significance level (p < 5.00E−08) in a meta-analysis with up to 143,677 individuals of European ancestry. SNPs are ordered based on their effect size estimates. All the genes (fourth column) were reported to be associated with birth weight in previous GWASs (Horikoshi et al., 2013; Horikoshi et al., 2016). Chr, chromosome; SNP, single-nucleotide polymorphism id; Position, genome position in base pair; Allele, effect allele and alternative allele; MAF, minor allele frequency; BETA, SNP effect size; SE, standard error; PVE, proportion of variance in birth weight explained by the SNP; p, N, and F represent p value, sample size, and F statistic, respectively.
Figure 2Causal effect estimates and 95% confidence intervals for lower birth weight on 21 diseases using the random-effects inverse variance weighted (IVW) method. Diseases are ordered based on their causal effect estimates. Estimations are carried out using both index SNPs and proxy SNPs. The dot size is proportional to the number of instrumental variables used for the given disease while dot color represents significance (p < 0.05 are highlighted in red). Disease names (x-axis) are further highlighted in red if the causal effects are significant after Bonferroni correction (p < 0.05/21).
Figure 3Causal effect estimates and 95% confidence intervals for lower birth weight on (A) CAD, (B) MI, (C) T2D, and (D) T2D_BMI. Estimations are carried out either using all SNPs (first column on x-axis) or using individual SNPs (the remaining columns on x-axis) based on Equation (14) in . Dot size is proportional to the effect size estimates, while dot color represents significance (p < 0.05 are highlighted in red). SNP that yields the largest causal effect estimate is also highlighted in red (x-axis).
Figure 4Relationship between the effect size estimates on lower birth weight (x-axis) and the effect size estimates on diseases (y-axis) for the 47 SNPs that serve as instrumental variables. Examined diseases include (A) CAD, (B) MI, (C) T2D, and (D) T2D_BMI. 95% confidence intervals for the estimated SNP effect sizes on disease are shown as vertical black lines, while the 95% confidence intervals for the estimated SNP effect sizes on birth weight are shown as horizontal black lines. The vertical and horizontal red dotted lines represent zero effects. The slope of fitted lines represents the estimated the casual effects of birth weight on the corresponding disease obtained using either the random-effects IVW method (red solid lines) or the MR-Egger regression (blue dotted lines). SNP outlier rs13875366 (chocolate dot) was not included in MR-Egger regression to avoid outlier influence. Due to the inclusion of an intercept in the MR-Egger regression, the fitted lines by MR-Egger regression (blue dotted lines) do not necessarily pass the origin.