Literature DB >> 17189194

Reverse translocation of tRNA in the ribosome.

Shinichiro Shoji1, Sarah E Walker, Kurt Fredrick.   

Abstract

A widely held view is that directional movement of tRNA in the ribosome is determined by an intrinsic mechanism and driven thermodynamically by transpeptidation. Here, we show that, in certain ribosomal complexes, the pretranslocation (PRE) state is thermodynamically favored over the posttranslocation (POST) state. Spontaneous and efficient conversion from the POST to PRE state is observed when EF-G is depleted from ribosomes in the POST state or when tRNA is added to the E site of ribosomes containing P-site tRNA. In the latter assay, the rate of tRNA movement is increased by streptomycin and neomycin, decreased by tetracycline, and not affected by the acylation state of the tRNA. In one case, we provide evidence that complex conversion occurs by reverse translocation (i.e., direct movement of the tRNAs from the E and P sites to the P and A sites, respectively). These findings have important implications for the energetics of translocation.

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Year:  2006        PMID: 17189194      PMCID: PMC2661759          DOI: 10.1016/j.molcel.2006.11.025

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  45 in total

1.  Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome.

Authors:  Y P Semenkov; M V Rodnina; W Wintermeyer
Journal:  Nat Struct Biol       Date:  2000-11

2.  Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site.

Authors:  Kurt Fredrick; Harry F Noller
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

Review 3.  Function of the universally conserved bacterial GTPases.

Authors:  Catherine E Caldon; Paul E March
Journal:  Curr Opin Microbiol       Date:  2003-04       Impact factor: 7.934

4.  Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites.

Authors:  Richard P Fahlman; Olke C Uhlenbeck
Journal:  Biochemistry       Date:  2004-06-15       Impact factor: 3.162

5.  Interactions of translational factor EF-G with the bacterial ribosome before and after mRNA translocation.

Authors:  Kevin S Wilson; Roxana Nechifor
Journal:  J Mol Biol       Date:  2004-03-12       Impact factor: 5.469

6.  Resistance to viomycin conferred by RNA of either ribosomal subunit.

Authors:  T Yamada; Y Mizugichi; K H Nierhaus; H G Wittmann
Journal:  Nature       Date:  1978-10-05       Impact factor: 49.962

Review 7.  Mechanisms of elongation on the ribosome: dynamics of a macromolecular machine.

Authors:  W Wintermeyer; F Peske; M Beringer; K B Gromadski; A Savelsbergh; M V Rodnina
Journal:  Biochem Soc Trans       Date:  2004-11       Impact factor: 5.407

8.  Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation.

Authors:  R K Agrawal; P Penczek; R A Grassucci; J Frank
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

9.  Coupling of GTP hydrolysis by elongation factor G to translocation and factor recycling on the ribosome.

Authors:  Vladimir I Katunin; Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  Biochemistry       Date:  2002-10-22       Impact factor: 3.162

10.  Dissociation rates of peptidyl-tRNA from the P-site of E.coli ribosomes.

Authors:  R Karimi; M Ehrenberg
Journal:  EMBO J       Date:  1996-03-01       Impact factor: 11.598

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  56 in total

1.  The conserved protein EF4 (LepA) modulates the elongation cycle of protein synthesis.

Authors:  Hanqing Liu; Chunlai Chen; Haibo Zhang; Jaskiran Kaur; Yale E Goldman; Barry S Cooperman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-19       Impact factor: 11.205

2.  Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy.

Authors:  Niels Fischer; Andrey L Konevega; Wolfgang Wintermeyer; Marina V Rodnina; Holger Stark
Journal:  Nature       Date:  2010-07-15       Impact factor: 49.962

3.  The transition from noncoded to coded protein synthesis: did coding mRNAs arise from stability-enhancing binding partners to tRNA?

Authors:  Harold Stephen Bernhardt; Warren Perry Tate
Journal:  Biol Direct       Date:  2010-04-09       Impact factor: 4.540

4.  EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome.

Authors:  Dejiu Zhang; Kaige Yan; Guangqiao Liu; Guangtao Song; Jiejian Luo; Yi Shi; Erchao Cheng; Shan Wu; Taijiao Jiang; Jizhong Lou; Ning Gao; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2016-01-25       Impact factor: 15.369

5.  A role for the 30S subunit E site in maintenance of the translational reading frame.

Authors:  Aishwarya Devaraj; Shinichiro Shoji; Eric D Holbrook; Kurt Fredrick
Journal:  RNA       Date:  2008-12-17       Impact factor: 4.942

6.  Spontaneous intersubunit rotation in single ribosomes.

Authors:  Peter V Cornish; Dmitri N Ermolenko; Harry F Noller; Taekjip Ha
Journal:  Mol Cell       Date:  2008-06-06       Impact factor: 17.970

Review 7.  EF-G and EF4: translocation and back-translocation on the bacterial ribosome.

Authors:  Hiroshi Yamamoto; Yan Qin; John Achenbach; Chengmin Li; Jaroslaw Kijek; Christian M T Spahn; Knud H Nierhaus
Journal:  Nat Rev Microbiol       Date:  2013-12-23       Impact factor: 60.633

Review 8.  Ribosomal translocation: one step closer to the molecular mechanism.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  ACS Chem Biol       Date:  2009-02-20       Impact factor: 5.100

9.  Ligand- and pH-induced conformational changes of RNA domain helix 69 revealed by 2-aminopurine fluorescence.

Authors:  Yogo Sakakibara; Sanjaya C Abeysirigunawardena; Anne-Cécile E Duc; Danielle N Dremann; Christine S Chow
Journal:  Angew Chem Int Ed Engl       Date:  2012-10-24       Impact factor: 15.336

10.  Structural basis for hygromycin B inhibition of protein biosynthesis.

Authors:  Maria A Borovinskaya; Shinichiro Shoji; Kurt Fredrick; Jamie H D Cate
Journal:  RNA       Date:  2008-06-20       Impact factor: 4.942

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