Literature DB >> 23812721

Control of ribosomal subunit rotation by elongation factor G.

Arto Pulk1, Jamie H D Cate.   

Abstract

Protein synthesis by the ribosome requires the translocation of transfer RNAs and messenger RNA by one codon after each peptide bond is formed, a reaction that requires ribosomal subunit rotation and is catalyzed by the guanosine triphosphatase (GTPase) elongation factor G (EF-G). We determined 3 angstrom resolution x-ray crystal structures of EF-G complexed with a nonhydrolyzable guanosine 5'-triphosphate (GTP) analog and bound to the Escherichia coli ribosome in different states of ribosomal subunit rotation. The structures reveal that EF-G binding to the ribosome stabilizes switch regions in the GTPase active site, resulting in a compact EF-G conformation that favors an intermediate state of ribosomal subunit rotation. These structures suggest that EF-G controls the translocation reaction by cycles of conformational rigidity and relaxation before and after GTP hydrolysis.

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Year:  2013        PMID: 23812721      PMCID: PMC4274944          DOI: 10.1126/science.1235970

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  56 in total

1.  Elongation factor G with effector loop from elongation factor Tu is inactive in translocation.

Authors:  Alexander Kolesnikov; Anatoly Gudkov
Journal:  FEBS Lett       Date:  2002-03-06       Impact factor: 4.124

2.  Locking and unlocking of ribosomal motions.

Authors:  Mikel Valle; Andrey Zavialov; Jayati Sengupta; Urmila Rawat; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

3.  Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation.

Authors:  Jingyi Fei; Pallav Kosuri; Daniel D MacDougall; Ruben L Gonzalez
Journal:  Mol Cell       Date:  2008-05-09       Impact factor: 17.970

4.  Role of domains 4 and 5 in elongation factor G functions on the ribosome.

Authors:  A Savelsbergh; N B Matassova; M V Rodnina; W Wintermeyer
Journal:  J Mol Biol       Date:  2000-07-21       Impact factor: 5.469

5.  Arginines 29 and 59 of elongation factor G are important for GTP hydrolysis or translocation on the ribosome.

Authors:  D Mohr; W Wintermeyer; M V Rodnina
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

Review 6.  The guanine nucleotide-binding switch in three dimensions.

Authors:  I R Vetter; A Wittinghofer
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

7.  The mechanism for activation of GTP hydrolysis on the ribosome.

Authors:  Rebecca M Voorhees; T Martin Schmeing; Ann C Kelley; V Ramakrishnan
Journal:  Science       Date:  2010-11-05       Impact factor: 47.728

8.  mRNA translocation occurs during the second step of ribosomal intersubunit rotation.

Authors:  Dmitri N Ermolenko; Harry F Noller
Journal:  Nat Struct Mol Biol       Date:  2011-03-13       Impact factor: 15.369

9.  Sordarin, an antifungal agent with a unique mode of action.

Authors:  Huan Liang
Journal:  Beilstein J Org Chem       Date:  2008-09-05       Impact factor: 2.883

10.  The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.

Authors:  T Martin Schmeing; Rebecca M Voorhees; Ann C Kelley; Yong-Gui Gao; Frank V Murphy; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2009-10-15       Impact factor: 47.728

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  94 in total

1.  Centers of motion associated with EF-Tu binding to the ribosome.

Authors:  Maxim Paci; George E Fox
Journal:  RNA Biol       Date:  2016-01-19       Impact factor: 4.652

2.  EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome.

Authors:  Dejiu Zhang; Kaige Yan; Guangqiao Liu; Guangtao Song; Jiejian Luo; Yi Shi; Erchao Cheng; Shan Wu; Taijiao Jiang; Jizhong Lou; Ning Gao; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2016-01-25       Impact factor: 15.369

3.  Heterologous Inferential Analysis (HIA) and Other Emerging Concepts: In Understanding Mitochondrial Variation In Pathogenesis: There is no More Low-Hanging Fruit.

Authors:  Antón Vila-Sanjurjo; Paul M Smith; Joanna L Elson
Journal:  Methods Mol Biol       Date:  2021

Review 4.  EF-G and EF4: translocation and back-translocation on the bacterial ribosome.

Authors:  Hiroshi Yamamoto; Yan Qin; John Achenbach; Chengmin Li; Jaroslaw Kijek; Christian M T Spahn; Knud H Nierhaus
Journal:  Nat Rev Microbiol       Date:  2013-12-23       Impact factor: 60.633

5.  Structure of EF-G-ribosome complex in a pretranslocation state.

Authors:  Yun Chen; Shu Feng; Veerendra Kumar; Rya Ero; Yong-Gui Gao
Journal:  Nat Struct Mol Biol       Date:  2013-08-04       Impact factor: 15.369

6.  Translocation at work.

Authors:  John Achenbach; Knud H Nierhaus
Journal:  Nat Struct Mol Biol       Date:  2013-09       Impact factor: 15.369

7.  Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.

Authors:  Eva Kummer; Nenad Ban
Journal:  EMBO J       Date:  2020-06-30       Impact factor: 11.598

8.  Structure of the ribosome with elongation factor G trapped in the pretranslocation state.

Authors:  Axel F Brilot; Andrei A Korostelev; Dmitri N Ermolenko; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

9.  Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation.

Authors:  David J F Ramrath; Laura Lancaster; Thiemo Sprink; Thorsten Mielke; Justus Loerke; Harry F Noller; Christian M T Spahn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

10.  Structure of BipA in GTP form bound to the ratcheted ribosome.

Authors:  Veerendra Kumar; Yun Chen; Rya Ero; Tofayel Ahmed; Jackie Tan; Zhe Li; Andrew See Weng Wong; Shashi Bhushan; Yong-Gui Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

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