| Literature DB >> 32483333 |
Julia Koehler Leman1,2, Brian D Weitzner3,4,5,6, Steven M Lewis7,8,9, Jared Adolf-Bryfogle10, Nawsad Alam11, Rebecca F Alford3, Melanie Aprahamian12, David Baker4,5, Kyle A Barlow13, Patrick Barth14,15, Benjamin Basanta4,16, Brian J Bender17, Kristin Blacklock18, Jaume Bonet14,19, Scott E Boyken5,6, Phil Bradley20, Chris Bystroff21, Patrick Conway4, Seth Cooper22, Bruno E Correia14,19, Brian Coventry4, Rhiju Das23, René M De Jong24, Frank DiMaio4,5, Lorna Dsilva22, Roland Dunbrack25, Alexander S Ford4, Brandon Frenz5,9, Darwin Y Fu26, Caleb Geniesse23, Lukasz Goldschmidt4, Ragul Gowthaman27,28, Jeffrey J Gray3,29, Dominik Gront30, Sharon Guffy7, Scott Horowitz31,32, Po-Ssu Huang4, Thomas Huber33, Tim M Jacobs34, Jeliazko R Jeliazkov29, David K Johnson35, Kalli Kappel36, John Karanicolas25, Hamed Khakzad19,37,38, Karen R Khar9,35, Sagar D Khare18,39,40,41,42, Firas Khatib43, Alisa Khramushin11, Indigo C King4,9, Robert Kleffner22, Brian Koepnick4, Tanja Kortemme44, Georg Kuenze26,45, Brian Kuhlman7, Daisuke Kuroda46,47, Jason W Labonte3,48, Jason K Lai15, Gideon Lapidoth49, Andrew Leaver-Fay7, Steffen Lindert12, Thomas Linsky4,5, Nir London11, Joseph H Lubin3, Sergey Lyskov3, Jack Maguire34, Lars Malmström19,37,38,50, Enrique Marcos4,51, Orly Marcu11, Nicholas A Marze3, Jens Meiler45,52,53, Rocco Moretti26, Vikram Khipple Mulligan54,4,5, Santrupti Nerli55, Christoffer Norn49, Shane Ó'Conchúir44, Noah Ollikainen44, Sergey Ovchinnikov4,5,56, Michael S Pacella3, Xingjie Pan44, Hahnbeom Park4, Ryan E Pavlovicz4,5,9, Manasi Pethe40,41, Brian G Pierce27,28, Kala Bharath Pilla33, Barak Raveh11, P Douglas Renfrew54, Shourya S Roy Burman3, Aliza Rubenstein18,42, Marion F Sauer57, Andreas Scheck14,19, William Schief10, Ora Schueler-Furman11, Yuval Sedan11, Alexander M Sevy57, Nikolaos G Sgourakis58, Lei Shi4,5, Justin B Siegel59,60,61, Daniel-Adriano Silva4, Shannon Smith26, Yifan Song4,5,9, Amelie Stein44, Maria Szegedy39, Frank D Teets7, Summer B Thyme4, Ray Yu-Ruei Wang4, Andrew Watkins23, Lior Zimmerman11, Richard Bonneau62,63,64,65.
Abstract
The Rosetta software for macromolecular modeling, docking and design is extensively used in laboratories worldwide. During two decades of development by a community of laboratories at more than 60 institutions, Rosetta has been continuously refactored and extended. Its advantages are its performance and interoperability between broad modeling capabilities. Here we review tools developed in the last 5 years, including over 80 methods. We discuss improvements to the score function, user interfaces and usability. Rosetta is available at http://www.rosettacommons.org.Entities:
Mesh：
Substances：
Year: 2020 PMID： 32483333 PMCID： PMC7603796 DOI： 10.1038/s41592-020-0848-2
Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547