Literature DB >> 33795432

Designed proteins assemble antibodies into modular nanocages.

Robby Divine1,2, Ha V Dang1, George Ueda1,2, Jorge A Fallas1,2, Ivan Vulovic1,2, William Sheffler2, Shally Saini1,3, Yan Ting Zhao1,3,4, Infencia Xavier Raj1,3, Peter A Morawski5, Madeleine F Jennewein6, Leah J Homad6, Yu-Hsin Wan6, Marti R Tooley2, Franziska Seeger1,2, Ali Etemadi2,7, Mitchell L Fahning5, James Lazarovits1,2, Alex Roederer2, Alexandra C Walls1, Lance Stewart2, Mohammadali Mazloomi7, Neil P King1,2, Daniel J Campbell5, Andrew T McGuire6,8, Leonidas Stamatatos6,8, Hannele Ruohola-Baker1,3, Julie Mathieu3,9, David Veesler1, David Baker10,2,11.   

Abstract

Multivalent display of receptor-engaging antibodies or ligands can enhance their activity. Instead of achieving multivalency by attachment to preexisting scaffolds, here we unite form and function by the computational design of nanocages in which one structural component is an antibody or Fc-ligand fusion and the second is a designed antibody-binding homo-oligomer that drives nanocage assembly. Structures of eight nanocages determined by electron microscopy spanning dihedral, tetrahedral, octahedral, and icosahedral architectures with 2, 6, 12, and 30 antibodies per nanocage, respectively, closely match the corresponding computational models. Antibody nanocages targeting cell surface receptors enhance signaling compared with free antibodies or Fc-fusions in death receptor 5 (DR5)-mediated apoptosis, angiopoietin-1 receptor (Tie2)-mediated angiogenesis, CD40 activation, and T cell proliferation. Nanocage assembly also increases severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pseudovirus neutralization by α-SARS-CoV-2 monoclonal antibodies and Fc-angiotensin-converting enzyme 2 (ACE2) fusion proteins.
Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2021        PMID: 33795432      PMCID: PMC8592034          DOI: 10.1126/science.abd9994

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  61 in total

1.  Optimal screening of surface-displayed polypeptide libraries.

Authors:  E T Boder; K D Wittrup
Journal:  Biotechnol Prog       Date:  1998 Jan-Feb

Review 2.  The coming of age of engineered multivalent antibodies.

Authors:  Natalia Nuñez-Prado; Marta Compte; Seandean Harwood; Ana Álvarez-Méndez; Simon Lykkemark; Laura Sanz; Luis Álvarez-Vallina
Journal:  Drug Discov Today       Date:  2015-03-07       Impact factor: 7.851

3.  A human T-cell leukemia virus type 1 regulatory element enhances the immunogenicity of human immunodeficiency virus type 1 DNA vaccines in mice and nonhuman primates.

Authors:  Dan H Barouch; Zhi-yong Yang; Wing-pui Kong; Birgit Korioth-Schmitz; Shawn M Sumida; Diana M Truitt; Michael G Kishko; Janelle C Arthur; Ayako Miura; John R Mascola; Norman L Letvin; Gary J Nabel
Journal:  J Virol       Date:  2005-07       Impact factor: 5.103

4.  Apo2L/TRAIL and the death receptor 5 agonist antibody AMG 655 cooperate to promote receptor clustering and antitumor activity.

Authors:  Jonathan D Graves; Jennifer J Kordich; Tzu-Hsuan Huang; Julia Piasecki; Tammy L Bush; Timothy Sullivan; Ian N Foltz; Wesley Chang; Heather Douangpanya; Thu Dang; Jason W O'Neill; Rommel Mallari; Xiaoning Zhao; Daniel G Branstetter; John M Rossi; Alexander M Long; Xin Huang; Pamela M Holland
Journal:  Cancer Cell       Date:  2014-07-17       Impact factor: 31.743

5.  Protein production by auto-induction in high density shaking cultures.

Authors:  F William Studier
Journal:  Protein Expr Purif       Date:  2005-05       Impact factor: 1.650

6.  Production of Immunoabsorbent Nanoparticles by Displaying Single-Domain Protein A on Potato Virus X.

Authors:  Kerstin Uhde-Holzem; Michael McBurney; Brylee David B Tiu; Rigoberto C Advincula; Rainer Fischer; Ulrich Commandeur; Nicole F Steinmetz
Journal:  Macromol Biosci       Date:  2015-10-06       Impact factor: 4.979

7.  Universal protection against influenza infection by a multidomain antibody to influenza hemagglutinin.

Authors:  Nick S Laursen; Robert H E Friesen; Xueyong Zhu; Mandy Jongeneelen; Sven Blokland; Jan Vermond; Alida van Eijgen; Chan Tang; Harry van Diepen; Galina Obmolova; Marijn van der Neut Kolfschoten; David Zuijdgeest; Roel Straetemans; Ryan M B Hoffman; Travis Nieusma; Jesper Pallesen; Hannah L Turner; Steffen M Bernard; Andrew B Ward; Jinquan Luo; Leo L M Poon; Anna P Tretiakova; James M Wilson; Maria P Limberis; Ronald Vogels; Boerries Brandenburg; Joost A Kolkman; Ian A Wilson
Journal:  Science       Date:  2018-11-02       Impact factor: 47.728

8.  Prevention of overfitting in cryo-EM structure determination.

Authors:  Sjors H W Scheres; Shaoxia Chen
Journal:  Nat Methods       Date:  2012-09       Impact factor: 28.547

9.  Generation of ordered protein assemblies using rigid three-body fusion.

Authors:  Ivan Vulovic; Qing Yao; Young-Jun Park; Alexis Courbet; Andrew Norris; Florian Busch; Aniruddha Sahasrabuddhe; Hannes Merten; Danny D Sahtoe; George Ueda; Jorge A Fallas; Sara J Weaver; Yang Hsia; Robert A Langan; Andreas Plückthun; Vicki H Wysocki; David Veesler; Grant J Jensen; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

10.  IgG-single-chain TRAIL fusion proteins for tumour therapy.

Authors:  Martin Siegemund; Felix Schneider; Meike Hutt; Oliver Seifert; Ines Müller; Dagmar Kulms; Klaus Pfizenmaier; Roland E Kontermann
Journal:  Sci Rep       Date:  2018-05-17       Impact factor: 4.379

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  24 in total

1.  SARS-CoV-2 escaped natural immunity, raising questions about vaccines and therapies.

Authors:  Emanuele Andreano; Rino Rappuoli
Journal:  Nat Med       Date:  2021-05-10       Impact factor: 53.440

Review 2.  Protein Nanoparticles: Uniting the Power of Proteins with Engineering Design Approaches.

Authors:  Nahal Habibi; Ava Mauser; Yeongun Ko; Joerg Lahann
Journal:  Adv Sci (Weinh)       Date:  2022-01-25       Impact factor: 16.806

Review 3.  Vaccinal antibodies: Fc antibody engineering to improve the antiviral antibody response and induce vaccine-like effects.

Authors:  Dhuha H Nawab
Journal:  Hum Vaccin Immunother       Date:  2021-11-29       Impact factor: 3.452

Review 4.  Protein Design: From the Aspect of Water Solubility and Stability.

Authors:  Rui Qing; Shilei Hao; Eva Smorodina; David Jin; Arthur Zalevsky; Shuguang Zhang
Journal:  Chem Rev       Date:  2022-08-03       Impact factor: 72.087

Review 5.  Protein Assembly by Design.

Authors:  Jie Zhu; Nicole Avakyan; Albert Kakkis; Alexander M Hoffnagle; Kenneth Han; Yiying Li; Zhiyin Zhang; Tae Su Choi; Youjeong Na; Chung-Jui Yu; F Akif Tezcan
Journal:  Chem Rev       Date:  2021-08-18       Impact factor: 72.087

6.  SARS-CoV-2 vaccines: anamnestic response in previously infected recipients.

Authors:  Jyothi N Purushotham; Neeltje van Doremalen; Vincent J Munster
Journal:  Cell Res       Date:  2021-08       Impact factor: 46.297

7.  Generation of ordered protein assemblies using rigid three-body fusion.

Authors:  Ivan Vulovic; Qing Yao; Young-Jun Park; Alexis Courbet; Andrew Norris; Florian Busch; Aniruddha Sahasrabuddhe; Hannes Merten; Danny D Sahtoe; George Ueda; Jorge A Fallas; Sara J Weaver; Yang Hsia; Robert A Langan; Andreas Plückthun; Vicki H Wysocki; David Veesler; Grant J Jensen; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

8.  A System for the Evolution of Protein-Protein Interaction Inducers.

Authors:  Jeffrey A Dewey; Saara-Anne Azizi; Vivian Lu; Bryan C Dickinson
Journal:  ACS Synth Biol       Date:  2021-07-28       Impact factor: 5.249

9.  Design of protein-binding proteins from the target structure alone.

Authors:  Longxing Cao; Brian Coventry; Inna Goreshnik; Buwei Huang; William Sheffler; Joon Sung Park; Kevin M Jude; Iva Marković; Rameshwar U Kadam; Koen H G Verschueren; Kenneth Verstraete; Scott Thomas Russell Walsh; Nathaniel Bennett; Ashish Phal; Aerin Yang; Lisa Kozodoy; Michelle DeWitt; Lora Picton; Lauren Miller; Eva-Maria Strauch; Nicholas D DeBouver; Allison Pires; Asim K Bera; Samer Halabiya; Bradley Hammerson; Wei Yang; Steffen Bernard; Lance Stewart; Ian A Wilson; Hannele Ruohola-Baker; Joseph Schlessinger; Sangwon Lee; Savvas N Savvides; K Christopher Garcia; David Baker
Journal:  Nature       Date:  2022-03-24       Impact factor: 69.504

10.  Multivalent designed proteins protect against SARS-CoV-2 variants of concern.

Authors:  Andrew C Hunt; James Brett Case; Young-Jun Park; Longxing Cao; Kejia Wu; Alexandra C Walls; Zhuoming Liu; John E Bowen; Hsien-Wei Yeh; Shally Saini; Louisa Helms; Yan Ting Zhao; Tien-Ying Hsiang; Tyler N Starr; Inna Goreshnik; Lisa Kozodoy; Lauren Carter; Rashmi Ravichandran; Lydia B Green; Wadim L Matochko; Christy A Thomson; Bastain Vögeli; Antje Krüger-Gericke; Laura A VanBlargan; Rita E Chen; Baoling Ying; Adam L Bailey; Natasha M Kafai; Scott Boyken; Ajasja Ljubetič; Natasha Edman; George Ueda; Cameron Chow; Amin Addetia; Nuttada Panpradist; Michael Gale; Benjamin S Freedman; Barry R Lutz; Jesse D Bloom; Hannele Ruohola-Baker; Sean P J Whelan; Lance Stewart; Michael S Diamond; David Veesler; Michael C Jewett; David Baker
Journal:  bioRxiv       Date:  2021-07-07
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