Literature DB >> 31760193

Automatic kidney segmentation in ultrasound images using subsequent boundary distance regression and pixelwise classification networks.

Shi Yin1, Qinmu Peng2, Hongming Li3, Zhengqiang Zhang4, Xinge You5, Katherine Fischer6, Susan L Furth7, Gregory E Tasian8, Yong Fan9.   

Abstract

It remains challenging to automatically segment kidneys in clinical ultrasound (US) images due to the kidneys' varied shapes and image intensity distributions, although semi-automatic methods have achieved promising performance. In this study, we propose subsequent boundary distance regression and pixel classification networks to segment the kidneys automatically. Particularly, we first use deep neural networks pre-trained for classification of natural images to extract high-level image features from US images. These features are used as input to learn kidney boundary distance maps using a boundary distance regression network and the predicted boundary distance maps are classified as kidney pixels or non-kidney pixels using a pixelwise classification network in an end-to-end learning fashion. We also adopted a data-augmentation method based on kidney shape registration to generate enriched training data from a small number of US images with manually segmented kidney labels. Experimental results have demonstrated that our method could automatically segment the kidney with promising performance, significantly better than deep learning-based pixel classification networks.
Copyright © 2019. Published by Elsevier B.V.

Entities:  

Keywords:  Boundary detection; Boundary distance regression; Pixelwise classification; Ultrasound images

Year:  2019        PMID: 31760193      PMCID: PMC6980346          DOI: 10.1016/j.media.2019.101602

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  25 in total

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Journal:  IEEE Trans Med Imaging       Date:  2005-01       Impact factor: 10.048

Review 2.  Ultrasound image segmentation: a survey.

Authors:  J Alison Noble; Djamal Boukerroui
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4.  DCAN: Deep contour-aware networks for object instance segmentation from histology images.

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Journal:  Med Image Anal       Date:  2016-11-16       Impact factor: 8.545

5.  Fully convolutional network ensembles for white matter hyperintensities segmentation in MR images.

Authors:  Hongwei Li; Gongfa Jiang; Jianguo Zhang; Ruixuan Wang; Zhaolei Wang; Wei-Shi Zheng; Bjoern Menze
Journal:  Neuroimage       Date:  2018-08-18       Impact factor: 6.556

6.  Automatic analysis of pediatric renal ultrasound using shape, anatomical and image acquisition priors.

Authors:  Xin Kang; Nabile Safdar; Emmarie Myers; Aaron D Martin; Enrico Grisan; Craig A Peters; Marius George Linguraru
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

7.  An Automated Approach for Kidney Segmentation in Three-Dimensional Ultrasound Images.

Authors:  Mahdi Marsousi; Konstantinos N Plataniotis; Stergios Stergiopoulos
Journal:  IEEE J Biomed Health Inform       Date:  2016-06-13       Impact factor: 5.772

8.  An approach for contour detection of human kidneys from ultrasound images using Markov random fields and active contours.

Authors:  Marcos Martín-Fernández; Carlos Alberola-López
Journal:  Med Image Anal       Date:  2005-02       Impact factor: 8.545

9.  Ultrasound as a diagnostic tool to differentiate acute from chronic renal failure.

Authors:  C A Ozmen; D Akin; S U Bilek; A H Bayrak; S Senturk; H Nazaroglu
Journal:  Clin Nephrol       Date:  2010-07       Impact factor: 0.975

10.  TRANSFER LEARNING FOR DIAGNOSIS OF CONGENITAL ABNORMALITIES OF THE KIDNEY AND URINARY TRACT IN CHILDREN BASED ON ULTRASOUND IMAGING DATA.

Authors:  Qiang Zheng; Gregory Tasian; Yong Fan
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2018-05-24
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3.  Auto-Segmentation Ultrasound-Based Radiomics Technology to Stratify Patient With Diabetic Kidney Disease: A Multi-Center Retrospective Study.

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4.  Multi-instance Deep Learning of Ultrasound Imaging Data for Pattern Classification of Congenital Abnormalities of the Kidney and Urinary Tract in Children.

Authors:  Shi Yin; Qinmu Peng; Hongming Li; Zhengqiang Zhang; Xinge You; Katherine Fischer; Susan L Furth; Yong Fan; Gregory E Tasian
Journal:  Urology       Date:  2020-05-20       Impact factor: 2.649

5.  Automated measurement of total kidney volume from 3D ultrasound images of patients affected by polycystic kidney disease and comparison to MR measurements.

Authors:  Jaidip M Jagtap; Adriana V Gregory; Heather L Homes; Darryl E Wright; Marie E Edwards; Zeynettin Akkus; Bradley J Erickson; Timothy L Kline
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6.  Mask-R[Formula: see text]CNN: a distance-field regression version of Mask-RCNN for fetal-head delineation in ultrasound images.

Authors:  Sara Moccia; Maria Chiara Fiorentino; Emanuele Frontoni
Journal:  Int J Comput Assist Radiol Surg       Date:  2021-06-22       Impact factor: 2.924

  6 in total

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