Literature DB >> 31879346

High-yield monolayer graphene grids for near-atomic resolution cryoelectron microscopy.

Yimo Han1, Xiao Fan2, Haozhe Wang3, Fang Zhao4, Christopher G Tully4, Jing Kong3, Nan Yao5, Nieng Yan1.   

Abstract

Cryogenic electron microscopy (cryo-EM) has become one of the most powerful techniques to reveal the atomic structures and working mechanisms of biological macromolecules. New designs of the cryo-EM grids-aimed at preserving thin, uniform vitrified ice and improving protein adsorption-have been considered a promising approach to achieving higher resolution with the minimal amount of materials and data. Here, we describe a method for preparing graphene cryo-EM grids with up to 99% monolayer graphene coverage that allows for more than 70% grid squares for effective data acquisition with improved image quality and protein density. Using our graphene grids, we have achieved 2.6-Å resolution for streptavidin, with a molecular weight of 52 kDa, from 11,000 particles. Our graphene grids increase the density of examined soluble, membrane, and lipoproteins by at least 5-fold, affording the opportunity for structural investigation of challenging proteins which cannot be produced in large quantity. In addition, our method employs only simple tools that most structural biology laboratories can access. Moreover, this approach supports customized grid designs targeting specific proteins, owing to its broad compatibility with a variety of nanomaterials.

Entities:  

Keywords:  UV/ozone; cryo-EM; graphene grid; high resolution; structure determination

Year:  2019        PMID: 31879346      PMCID: PMC6969529          DOI: 10.1073/pnas.1919114117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

Review 1.  Cryo-EM--the first thirty years.

Authors:  J Dubochet
Journal:  J Microsc       Date:  2012-03       Impact factor: 1.758

2.  EMAN2: an extensible image processing suite for electron microscopy.

Authors:  Guang Tang; Liwei Peng; Philip R Baldwin; Deepinder S Mann; Wen Jiang; Ian Rees; Steven J Ludtke
Journal:  J Struct Biol       Date:  2006-06-08       Impact factor: 2.867

3.  Preparation of macromolecular complexes for cryo-electron microscopy.

Authors:  Robert A Grassucci; Derek J Taylor; Joachim Frank
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 4.  Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy.

Authors:  Nikolaus Grigorieff; Stephen C Harrison
Journal:  Curr Opin Struct Biol       Date:  2011-02-18       Impact factor: 6.809

Review 5.  Single-Particle Cryo-EM at Crystallographic Resolution.

Authors:  Yifan Cheng
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

6.  Low-Temperature Copper Bonding Strategy with Graphene Interlayer.

Authors:  Haozhe Wang; Wei Sun Leong; Fengtian Hu; Longlong Ju; Cong Su; Yukun Guo; Ju Li; Ming Li; Anmin Hu; Jing Kong
Journal:  ACS Nano       Date:  2018-02-06       Impact factor: 15.881

Review 7.  Cryo-EM: A Unique Tool for the Visualization of Macromolecular Complexity.

Authors:  Eva Nogales; Sjors H W Scheres
Journal:  Mol Cell       Date:  2015-05-21       Impact factor: 17.970

Review 8.  Approaches to altering particle distributions in cryo-electron microscopy sample preparation.

Authors:  Ieva Drulyte; Rachel M Johnson; Emma L Hesketh; Daniel L Hurdiss; Charlotte A Scarff; Sebastian A Porav; Neil A Ranson; Stephen P Muench; Rebecca F Thompson
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-05-18       Impact factor: 7.652

9.  Structure of the TRPV1 ion channel determined by electron cryo-microscopy.

Authors:  Maofu Liao; Erhu Cao; David Julius; Yifan Cheng
Journal:  Nature       Date:  2013-12-05       Impact factor: 49.962

10.  Controlling protein adsorption on graphene for cryo-EM using low-energy hydrogen plasmas.

Authors:  Christopher J Russo; Lori A Passmore
Journal:  Nat Methods       Date:  2014-04-20       Impact factor: 28.547

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  17 in total

1.  Cryo-EM analysis of a membrane protein embedded in the liposome.

Authors:  Xia Yao; Xiao Fan; Nieng Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-17       Impact factor: 11.205

Review 2.  Present and Emerging Methodologies in Cryo-EM Single-Particle Analysis.

Authors:  Mengyu Wu; Gabriel C Lander
Journal:  Biophys J       Date:  2020-09-01       Impact factor: 4.033

Review 3.  Membranes under the Magnetic Lens: A Dive into the Diverse World of Membrane Protein Structures Using Cryo-EM.

Authors:  Sarah J Piper; Rachel M Johnson; Denise Wootten; Patrick M Sexton
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

4.  Coupling of distant ATPase domains in the circadian clock protein KaiC.

Authors:  Jeffrey A Swan; Colby R Sandate; Archana G Chavan; Alfred M Freeberg; Diana Etwaru; Dustin C Ernst; Joseph G Palacios; Susan S Golden; Andy LiWang; Gabriel C Lander; Carrie L Partch
Journal:  Nat Struct Mol Biol       Date:  2022-07-21       Impact factor: 18.361

5.  Thicker Ice Improves the Integrity and Angular Distribution of CDC48A Hexamers on Cryo-EM Grids.

Authors:  Brandon Huntington; Lingyun Zhao; Patrick Bron; Umar F Shahul Hameed; Stefan T Arold; Bilal M Qureshi
Journal:  Front Mol Biosci       Date:  2022-06-17

6.  Direct visualization of floppy two-dimensional DNA origami using cryogenic electron microscopy.

Authors:  Heng Ni; Xiao Fan; Feng Zhou; Galio Guo; Jae Young Lee; Nadrian C Seeman; Do-Nyun Kim; Nan Yao; Paul M Chaikin; Yimo Han
Journal:  iScience       Date:  2022-05-07

Review 7.  Understanding the invisible hands of sample preparation for cryo-EM.

Authors:  Giulia Weissenberger; Rene J M Henderikx; Peter J Peters
Journal:  Nat Methods       Date:  2021-05-07       Impact factor: 47.990

8.  High-power near-concentric Fabry-Perot cavity for phase contrast electron microscopy.

Authors:  Carter Turnbaugh; Jeremy J Axelrod; Sara L Campbell; Jeske Y Dioquino; Petar N Petrov; Jonathan Remis; Osip Schwartz; Zanlin Yu; Yifan Cheng; Robert M Glaeser; Holger Mueller
Journal:  Rev Sci Instrum       Date:  2021-05-01       Impact factor: 1.523

Review 9.  Cryo-EM as a powerful tool for drug discovery.

Authors:  John H Van Drie; Liang Tong
Journal:  Bioorg Med Chem Lett       Date:  2020-09-02       Impact factor: 2.823

10.  2.5 Å-resolution structure of human CDK-activating kinase bound to the clinical inhibitor ICEC0942.

Authors:  Basil J Greber; Jonathan Remis; Simak Ali; Eva Nogales
Journal:  Biophys J       Date:  2021-01-19       Impact factor: 4.033

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