Literature DB >> 26000851

Cryo-EM: A Unique Tool for the Visualization of Macromolecular Complexity.

Eva Nogales1, Sjors H W Scheres2.   

Abstract

3D cryo-electron microscopy (cryo-EM) is an expanding structural biology technique that has recently undergone a quantum leap progression in its achievable resolution and its applicability to the study of challenging biological systems. Because crystallization is not required, only small amounts of sample are needed, and because images can be classified in a computer, the technique has the potential to deal with compositional and conformational mixtures. Therefore, cryo-EM can be used to investigate complete and fully functional macromolecular complexes in different functional states, providing a richness of biological insight. In this review, we underlie some of the principles behind the cryo-EM methodology of single particle analysis and discuss some recent results of its application to challenging systems of paramount biological importance. We place special emphasis on new methodological developments that are leading to an explosion of new studies, many of which are reaching resolutions that could only be dreamed of just a couple of years ago.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26000851      PMCID: PMC4441764          DOI: 10.1016/j.molcel.2015.02.019

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  101 in total

1.  The 4 A X-ray structure of a tubulin:stathmin-like domain complex.

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Journal:  Cell       Date:  2000-09-15       Impact factor: 41.582

2.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

3.  FREALIGN: high-resolution refinement of single particle structures.

Authors:  Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2006-06-02       Impact factor: 2.867

Review 4.  Three-dimensional reconstruction of single particles from random and nonrandom tilt series.

Authors:  M Radermacher
Journal:  J Electron Microsc Tech       Date:  1988-08

5.  Acetylcholine receptor channel imaged in the open state.

Authors:  N Unwin
Journal:  Nature       Date:  1995-01-05       Impact factor: 49.962

6.  Structure of the yeast mitochondrial large ribosomal subunit.

Authors:  Alexey Amunts; Alan Brown; Xiao-Chen Bai; Jose L Llácer; Tanweer Hussain; Paul Emsley; Fei Long; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

7.  Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy.

Authors:  R Henderson; J M Baldwin; T A Ceska; F Zemlin; E Beckmann; K H Downing
Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

8.  Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening.

Authors:  Sebastian Grünberg; Linda Warfield; Steven Hahn
Journal:  Nat Struct Mol Biol       Date:  2012-07-01       Impact factor: 15.369

9.  Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome.

Authors:  Israel S Fernández; Xiao-Chen Bai; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Cell       Date:  2014-05-01       Impact factor: 41.582

10.  Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine.

Authors:  Wilson Wong; Xiao-chen Bai; Alan Brown; Israel S Fernandez; Eric Hanssen; Melanie Condron; Yan Hong Tan; Jake Baum; Sjors H W Scheres
Journal:  Elife       Date:  2014-06-09       Impact factor: 8.140

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  101 in total

Review 1.  RNA Structural Differentiation: Opportunities with Pattern Recognition.

Authors:  Christopher S Eubanks; Amanda E Hargrove
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

Review 2.  Generalized single-particle cryo-EM--a historical perspective.

Authors:  Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-11-12       Impact factor: 1.571

Review 3.  Principles of cryo-EM single-particle image processing.

Authors:  Fred J Sigworth
Journal:  Microscopy (Oxf)       Date:  2015-12-24       Impact factor: 1.571

Review 4.  Insights into the channel gating of P2X receptors from structures, dynamics and small molecules.

Authors:  Jin Wang; Ye Yu
Journal:  Acta Pharmacol Sin       Date:  2016-01       Impact factor: 6.150

5.  Metabolite Control of Translation by Conserved Peptide uORFs: The Ribosome as a Metabolite Multisensor.

Authors:  Sjors van der Horst; Teodora Filipovska; Johannes Hanson; Sjef Smeekens
Journal:  Plant Physiol       Date:  2019-08-26       Impact factor: 8.340

6.  One step ahead: Innovation in core facilities.

Authors:  Saskia Lippens; Christophe D'Enfert; Lilla Farkas; Anna Kehres; Bernhard Korn; Mònica Morales; Rainer Pepperkok; Lavanya Premvardhan; Ralph Schlapbach; Andreas Tiran; Doris Meder; Geert Van Minnebruggen
Journal:  EMBO Rep       Date:  2019-03-14       Impact factor: 8.807

7.  Methods for Molecular Modelling of Protein Complexes.

Authors:  Tejashree Rajaram Kanitkar; Neeladri Sen; Sanjana Nair; Neelesh Soni; Kaustubh Amritkar; Yogendra Ramtirtha; M S Madhusudhan
Journal:  Methods Mol Biol       Date:  2021

8.  Editorial overview: Cryo Electron Microscopy: Exciting advances in CryoEM Herald a new era in structural biology.

Authors:  Wah Chiu; Kenneth H Downing
Journal:  Curr Opin Struct Biol       Date:  2017-08-08       Impact factor: 6.809

9.  Opportunities and Challenges in RNA Structural Modeling and Design.

Authors:  Tamar Schlick; Anna Marie Pyle
Journal:  Biophys J       Date:  2017-02-02       Impact factor: 4.033

10.  Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.

Authors:  Kaiming Zhang; Sarah C Keane; Zhaoming Su; Rossitza N Irobalieva; Muyuan Chen; Verna Van; Carly A Sciandra; Jan Marchant; Xiao Heng; Michael F Schmid; David A Case; Steven J Ludtke; Michael F Summers; Wah Chiu
Journal:  Structure       Date:  2018-02-02       Impact factor: 5.006

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