Literature DB >> 31803347

COLLABORATIVE CLUSTERING OF SUBJECTS AND RADIOMIC FEATURES FOR PREDICTING CLINICAL OUTCOMES OF RECTAL CANCER PATIENTS.

Hangfan Liu1, Hongming Li1, Pamela Boimel2, James Janopaul-Naylor2, Haoyu Zhong2, Ying Xiao2, Edgar Ben-Josef2, Yong Fan1.   

Abstract

Most machine learning approaches in radiomics studies ignore the underlying difference of radiomic features computed from heterogeneous groups of patients, and intrinsic correlations of the features are not fully exploited yet. In order to better predict clinical outcomes of cancer patients, we adopt an unsupervised machine learning method to simultaneously stratify cancer patients into distinct risk groups based on their radiomic features and learn low-dimensional representations of the radiomic features for robust prediction of their clinical outcomes. Based on nonnegative matrix tri-factorization techniques, the proposed method applies collaborative clustering to radiomic features of cancer patients to obtain clusters of both the patients and their radiomic features so that patients with distinct imaging patterns are stratified into different risk groups and highly correlated radiomic features are grouped in the same radiomic feature clusters. Experiments on a FDG-PET/CT dataset of rectal cancer patients have demonstrated that the proposed method facilitates better stratification of patients with distinct survival patterns and learning of more effective low-dimensional feature representations that ultimately leads to accurate prediction of patient survival, outperforming conventional methods under comparison.

Entities:  

Keywords:  Collaborative clustering; nonnegative matrix tri-factorization; patient stratification; radiomics; rectal cancer; unsupervised learning

Year:  2019        PMID: 31803347      PMCID: PMC6892162          DOI: 10.1109/ISBI.2019.8759512

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  11 in total

1.  Evaluation of survival data and two new rank order statistics arising in its consideration.

Authors:  N Mantel
Journal:  Cancer Chemother Rep       Date:  1966-03

2.  Unsupervised machine learning of radiomic features for predicting treatment response and overall survival of early stage non-small cell lung cancer patients treated with stereotactic body radiation therapy.

Authors:  Hongming Li; Maya Galperin-Aizenberg; Daniel Pryma; Charles B Simone; Yong Fan
Journal:  Radiother Oncol       Date:  2018-07-04       Impact factor: 6.280

Review 3.  Radiomics: the process and the challenges.

Authors:  Virendra Kumar; Yuhua Gu; Satrajit Basu; Anders Berglund; Steven A Eschrich; Matthew B Schabath; Kenneth Forster; Hugo J W L Aerts; Andre Dekker; David Fenstermacher; Dmitry B Goldgof; Lawrence O Hall; Philippe Lambin; Yoganand Balagurunathan; Robert A Gatenby; Robert J Gillies
Journal:  Magn Reson Imaging       Date:  2012-08-13       Impact factor: 2.546

4.  A radiomics model from joint FDG-PET and MRI texture features for the prediction of lung metastases in soft-tissue sarcomas of the extremities.

Authors:  M Vallières; C R Freeman; S R Skamene; I El Naqa
Journal:  Phys Med Biol       Date:  2015-06-29       Impact factor: 3.609

5.  Long-term outcome in patients with a pathological complete response after chemoradiation for rectal cancer: a pooled analysis of individual patient data.

Authors:  Monique Maas; Patty J Nelemans; Vincenzo Valentini; Prajnan Das; Claus Rödel; Li-Jen Kuo; Felipe A Calvo; Julio García-Aguilar; Rob Glynne-Jones; Karin Haustermans; Mohammed Mohiuddin; Salvatore Pucciarelli; William Small; Javier Suárez; George Theodoropoulos; Sebastiano Biondo; Regina G H Beets-Tan; Geerard L Beets
Journal:  Lancet Oncol       Date:  2010-08-06       Impact factor: 41.316

6.  Regression modelling strategies for improved prognostic prediction.

Authors:  F E Harrell; K L Lee; R M Califf; D B Pryor; R A Rosati
Journal:  Stat Med       Date:  1984 Apr-Jun       Impact factor: 2.373

7.  Feature selection by optimizing a lower bound of conditional mutual information.

Authors:  Hanyang Peng; Yong Fan
Journal:  Inf Sci (N Y)       Date:  2017-08-09       Impact factor: 6.795

8.  Rectal Cancer: Assessment of Neoadjuvant Chemoradiation Outcome based on Radiomics of Multiparametric MRI.

Authors:  Ke Nie; Liming Shi; Qin Chen; Xi Hu; Salma K Jabbour; Ning Yue; Tianye Niu; Xiaonan Sun
Journal:  Clin Cancer Res       Date:  2016-05-16       Impact factor: 12.531

9.  Can clinical factors be used as a selection tool for an organ-preserving strategy in rectal cancer?

Authors:  Ines Joye; Annelies Debucquoy; Steffen Fieuws; Albert Wolthuis; Xavier Sagaert; André D'Hoore; Karin Haustermans
Journal:  Acta Oncol       Date:  2016-05-04       Impact factor: 4.089

10.  Radiomics: Images Are More than Pictures, They Are Data.

Authors:  Robert J Gillies; Paul E Kinahan; Hedvig Hricak
Journal:  Radiology       Date:  2015-11-18       Impact factor: 11.105

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  4 in total

1.  Robust Collaborative Clustering of Subjects and Radiomic Features for Cancer Prognosis.

Authors:  Hangfan Liu; Hongming Li; Mohamad Habes; Yuemeng Li; Pamela Boimel; James Janopaul-Naylor; Ying Xiao; Edgar Ben-Josef; Yong Fan
Journal:  IEEE Trans Biomed Eng       Date:  2020-01-27       Impact factor: 4.538

Review 2.  Radiomics in Oncological PET Imaging: A Systematic Review-Part 2, Infradiaphragmatic Cancers, Blood Malignancies, Melanoma and Musculoskeletal Cancers.

Authors:  David Morland; Elizabeth Katherine Anna Triumbari; Luca Boldrini; Roberto Gatta; Daniele Pizzuto; Salvatore Annunziata
Journal:  Diagnostics (Basel)       Date:  2022-05-27

3.  Adaptive Sparsity Regularization Based Collaborative Clustering for Cancer Prognosis.

Authors:  Hangfan Liu; Hongming Li; Yuemeng Li; Shi Yin; Pamela Boimel; James Janopaul-Naylor; Haoyu Zhong; Ying Xiao; Edgar Ben-Josef; Yong Fan
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

4.  Extensive Evaluation of Morphological Statistical Harmonization for Brain Age Prediction.

Authors:  Angela Lombardi; Nicola Amoroso; Domenico Diacono; Alfonso Monaco; Sabina Tangaro; Roberto Bellotti
Journal:  Brain Sci       Date:  2020-06-11
  4 in total

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