Literature DB >> 31494759

Radical SAM enzymes: surprises along the path to understanding mechanism.

William E Broderick1, Joan B Broderick2.   

Abstract

As the field of radical SAM enzymology has grown from a few examples in the 1990s to hundreds of thousands today, a fundamental question has remained: how does Nature use S-adenosyl-L-methionine to initiate radical reactions? This was a driving question when we first began studying pyruvate formate-lyase activating enzyme in 1993, and our journey for answers has brought us to many surprising discoveries, from the direct coordination of SAM to a unique iron in a [4Fe-4S] cluster, to our recent discovery of an organometallic intermediate and our ability to quantitatively produce and characterize the long-sought 5'-deoxyadenosyl radical intermediate. These adventures and what we have learned along the way about this fundamentally novel chemistry is described in this review.

Entities:  

Keywords:  Deoxyadenosyl radical; Organometallic; Radical SAM; S-adenosylmethionine

Mesh:

Substances:

Year:  2019        PMID: 31494759      PMCID: PMC8837180          DOI: 10.1007/s00775-019-01706-w

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  44 in total

1.  Crystal structure of coproporphyrinogen III oxidase reveals cofactor geometry of Radical SAM enzymes.

Authors:  Gunhild Layer; Jürgen Moser; Dirk W Heinz; Dieter Jahn; Wolf-Dieter Schubert
Journal:  EMBO J       Date:  2003-12-01       Impact factor: 11.598

2.  The role of S-adenosylmethionine in the lysine 2,3-aminomutase reaction.

Authors:  M Moss; P A Frey
Journal:  J Biol Chem       Date:  1987-11-05       Impact factor: 5.157

3.  Electron-nuclear double resonance spectroscopic evidence that S-adenosylmethionine binds in contact with the catalytically active [4Fe-4S](+) cluster of pyruvate formate-lyase activating enzyme.

Authors:  Charles J Walsby; Wei Hong; William E Broderick; Jennifer Cheek; Danilo Ortillo; Joan B Broderick; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2002-03-27       Impact factor: 15.419

4.  Why Nature Uses Radical SAM Enzymes so Widely: Electron Nuclear Double Resonance Studies of Lysine 2,3-Aminomutase Show the 5'-dAdo• "Free Radical" Is Never Free.

Authors:  Masaki Horitani; Amanda S Byer; Krista A Shisler; Tilak Chandra; Joan B Broderick; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2015-05-19       Impact factor: 15.419

5.  Detection by electron spin resonance of an exchange-coupled Cob(II)alamin...free radical pair species generated by anaerobic photolysis of polycrystalline adenosylcobalamin.

Authors:  V D Ghanekar; R J Lin; R E Coffman; R L Blakley
Journal:  Biochem Biophys Res Commun       Date:  1981-07-16       Impact factor: 3.575

6.  Post-translational activation introduces a free radical into pyruvate formate-lyase.

Authors:  J Knappe; F A Neugebauer; H P Blaschkowski; M Gänzler
Journal:  Proc Natl Acad Sci U S A       Date:  1984-03       Impact factor: 11.205

7.  Spore photoproduct lyase from Bacillus subtilis spores is a novel iron-sulfur DNA repair enzyme which shares features with proteins such as class III anaerobic ribonucleotide reductases and pyruvate-formate lyases.

Authors:  R Rebeil; Y Sun; L Chooback; M Pedraza-Reyes; C Kinsland; T P Begley; W L Nicholson
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

8.  X-ray structure of the [FeFe]-hydrogenase maturase HydE from Thermotoga maritima.

Authors:  Yvain Nicolet; Jon K Rubach; Matthew C Posewitz; Patricia Amara; Carole Mathevon; Mohamed Atta; Marc Fontecave; Juan C Fontecilla-Camps
Journal:  J Biol Chem       Date:  2008-04-08       Impact factor: 5.157

Review 9.  Lysine 2,3-aminomutase: is adenosylmethionine a poor man's adenosylcobalamin?

Authors:  P A Frey
Journal:  FASEB J       Date:  1993-05       Impact factor: 5.191

10.  The Structure-Function Linkage Database.

Authors:  Eyal Akiva; Shoshana Brown; Daniel E Almonacid; Alan E Barber; Ashley F Custer; Michael A Hicks; Conrad C Huang; Florian Lauck; Susan T Mashiyama; Elaine C Meng; David Mischel; John H Morris; Sunil Ojha; Alexandra M Schnoes; Doug Stryke; Jeffrey M Yunes; Thomas E Ferrin; Gemma L Holliday; Patricia C Babbitt
Journal:  Nucleic Acids Res       Date:  2013-11-23       Impact factor: 16.971

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  9 in total

1.  Targeting viperin to the mitochondrion inhibits the thiolase activity of the trifunctional enzyme complex.

Authors:  Arti B Dumbrepatil; Kelcie A Zegalia; Keerthi Sajja; Robert T Kennedy; E Neil G Marsh
Journal:  J Biol Chem       Date:  2020-01-24       Impact factor: 5.157

2.  The B12-independent glycerol dehydratase activating enzyme from Clostridium butyricum cleaves SAM to produce 5'-deoxyadenosine and not 5'-deoxy-5'-(methylthio)adenosine.

Authors:  William G Walls; James D Moody; Elizabeth C McDaniel; Maria Villanueva; Eric M Shepard; William E Broderick; Joan B Broderick
Journal:  J Inorg Biochem       Date:  2021-11-12       Impact factor: 4.155

Review 3.  Making and breaking carbon-carbon bonds in class C radical SAM methyltransferases.

Authors:  Marley A Brimberry; Liju Mathew; William Lanzilotta
Journal:  J Inorg Biochem       Date:  2021-10-22       Impact factor: 4.155

Review 4.  Highlighting the Unique Roles of Radical S-Adenosylmethionine Enzymes in Methanogenic Archaea.

Authors:  Kaleb Boswinkle; Justin McKinney; Kylie D Allen
Journal:  J Bacteriol       Date:  2022-07-26       Impact factor: 3.476

5.  Two Radical SAM Enzymes Are Necessary and Sufficient for the In Vitro Production of the Oxetane Nucleoside Antiviral Agent Albucidin.

Authors:  Po-Hsun Fan; Yujie Geng; Anthony J Romo; Aoshu Zhong; Jiawei Zhang; Yu-Cheng Yeh; Yu-Hsuan Lee; Hung-Wen Liu
Journal:  Angew Chem Int Ed Engl       Date:  2022-09-20       Impact factor: 16.823

6.  Analysis of S-Adenosylmethionine and S-Adenosylhomocysteine: Method Optimisation and Profiling in Healthy Adults upon Short-Term Dietary Intervention.

Authors:  Aida Corrillero Bravo; Maria Nieves Ligero Aguilera; Nahuel R Marziali; Lennart Moritz; Victoria Wingert; Katharina Klotz; Anke Schumann; Sarah C Grünert; Ute Spiekerkoetter; Urs Berger; Ann-Kathrin Lederer; Roman Huber; Luciana Hannibal
Journal:  Metabolites       Date:  2022-04-20

7.  S-Adenosyl-l-ethionine is a Catalytically Competent Analog of S-Adenosyl-l-methione (SAM) in the Radical SAM Enzyme HydG.

Authors:  Stella Impano; Hao Yang; Eric M Shepard; Ryan Swimley; Adrien Pagnier; William E Broderick; Brian M Hoffman; Joan B Broderick
Journal:  Angew Chem Int Ed Engl       Date:  2020-12-01       Impact factor: 15.336

8.  Activation of Glycyl Radical Enzymes─Multiscale Modeling Insights into Catalysis and Radical Control in a Pyruvate Formate-Lyase-Activating Enzyme.

Authors:  Marko Hanževački; Anna K Croft; Christof M Jäger
Journal:  J Chem Inf Model       Date:  2022-06-30       Impact factor: 6.162

9.  Structural Insight into the Substrate Scope of Viperin and Viperin-like Enzymes from Three Domains of Life.

Authors:  Jake C Lachowicz; Anthony S Gizzi; Steven C Almo; Tyler L Grove
Journal:  Biochemistry       Date:  2021-06-22       Impact factor: 3.162

  9 in total

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