Literature DB >> 34847521

The B12-independent glycerol dehydratase activating enzyme from Clostridium butyricum cleaves SAM to produce 5'-deoxyadenosine and not 5'-deoxy-5'-(methylthio)adenosine.

William G Walls1, James D Moody1, Elizabeth C McDaniel1, Maria Villanueva1, Eric M Shepard1, William E Broderick1, Joan B Broderick2.   

Abstract

Glycerol dehydratase activating enzyme (GD-AE) is a radical S-adenosyl-l-methionine (SAM) enzyme that installs a catalytically essential amino acid backbone radical onto glycerol dehydratase in bacteria under anaerobic conditions. Although GD-AE is closely homologous to other radical SAM activases that have been shown to cleave the S-C(5') bond of SAM to produce 5'-deoxyadenosine (5'-dAdoH) and methionine, GD-AE from Clostridium butyricum has been reported to instead cleave the S-C(γ) bond of SAM to yield 5'-deoxy-5'-(methylthio)adenosine (MTA). Here we re-investigate the SAM cleavage reaction catalyzed by GD-AE and show that it produces the widely observed 5'-dAdoH, and not the less conventional product MTA.
Copyright © 2021. Published by Elsevier Inc.

Entities:  

Keywords:  5′-deoxy-5′-methylthioadenosine; 5′-deoxyadenosine; AdoMet; Glycerol Dehydratase Activating Enzyme; Glycyl Radical Enzyme Activating Enzyme; Radical SAM; S-adenosyl-L-methionine

Mesh:

Substances:

Year:  2021        PMID: 34847521      PMCID: PMC8889718          DOI: 10.1016/j.jinorgbio.2021.111662

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  52 in total

Review 1.  SUMO fusion technology for enhanced protein production in prokaryotic and eukaryotic expression systems.

Authors:  Tadas Panavas; Carsten Sanders; Tauseef R Butt
Journal:  Methods Mol Biol       Date:  2009

2.  Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.

Authors:  Hetunandan Kamisetty; Sergey Ovchinnikov; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-05       Impact factor: 11.205

3.  Assembly of iron-sulfur clusters. Identification of an iscSUA-hscBA-fdx gene cluster from Azotobacter vinelandii.

Authors:  L Zheng; V L Cash; D H Flint; D R Dean
Journal:  J Biol Chem       Date:  1998-05-22       Impact factor: 5.157

Review 4.  Glycyl radical activating enzymes: structure, mechanism, and substrate interactions.

Authors:  Krista A Shisler; Joan B Broderick
Journal:  Arch Biochem Biophys       Date:  2014-01-31       Impact factor: 4.013

5.  An anchoring role for FeS clusters: chelation of the amino acid moiety of S-adenosylmethionine to the unique iron site of the [4Fe-4S] cluster of pyruvate formate-lyase activating enzyme.

Authors:  Charles J Walsby; Danilo Ortillo; William E Broderick; Joan B Broderick; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2002-09-25       Impact factor: 15.419

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Predicting protein structures with a multiplayer online game.

Authors:  Seth Cooper; Firas Khatib; Adrien Treuille; Janos Barbero; Jeehyung Lee; Michael Beenen; Andrew Leaver-Fay; David Baker; Zoran Popović; Foldit Players
Journal:  Nature       Date:  2010-08-05       Impact factor: 49.962

8.  S-Adenosyl-l-ethionine is a Catalytically Competent Analog of S-Adenosyl-l-methione (SAM) in the Radical SAM Enzyme HydG.

Authors:  Stella Impano; Hao Yang; Eric M Shepard; Ryan Swimley; Adrien Pagnier; William E Broderick; Brian M Hoffman; Joan B Broderick
Journal:  Angew Chem Int Ed Engl       Date:  2020-12-01       Impact factor: 15.336

9.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

Review 10.  Radical S-Adenosylmethionine Enzymes in Human Health and Disease.

Authors:  Bradley J Landgraf; Erin L McCarthy; Squire J Booker
Journal:  Annu Rev Biochem       Date:  2016-05-04       Impact factor: 23.643

View more
  1 in total

1.  Mechanism of Radical S-Adenosyl-l-methionine Adenosylation: Radical Intermediates and the Catalytic Competence of the 5'-Deoxyadenosyl Radical.

Authors:  Maike N Lundahl; Raymond Sarksian; Hao Yang; Richard J Jodts; Adrien Pagnier; Donald F Smith; Martín A Mosquera; Wilfred A van der Donk; Brian M Hoffman; William E Broderick; Joan B Broderick
Journal:  J Am Chem Soc       Date:  2022-03-08       Impact factor: 16.383

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.