Literature DB >> 31452977

RAC-CNN: multimodal deep learning based automatic detection and classification of rod and cone photoreceptors in adaptive optics scanning light ophthalmoscope images.

David Cunefare1, Alison L Huckenpahler2, Emily J Patterson3, Alfredo Dubra4, Joseph Carroll2,3, Sina Farsiu1,5.   

Abstract

Quantification of the human rod and cone photoreceptor mosaic in adaptive optics scanning light ophthalmoscope (AOSLO) images is useful for the study of various retinal pathologies. Subjective and time-consuming manual grading has remained the gold standard for evaluating these images, with no well validated automatic methods for detecting individual rods having been developed. We present a novel deep learning based automatic method, called the rod and cone CNN (RAC-CNN), for detecting and classifying rods and cones in multimodal AOSLO images. We test our method on images from healthy subjects as well as subjects with achromatopsia over a range of retinal eccentricities. We show that our method is on par with human grading for detecting rods and cones.

Entities:  

Year:  2019        PMID: 31452977      PMCID: PMC6701534          DOI: 10.1364/BOE.10.003815

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.562


  63 in total

1.  Adaptive optics two-photon excited fluorescence lifetime imaging ophthalmoscopy of exogenous fluorophores in mice.

Authors:  James A Feeks; Jennifer J Hunter
Journal:  Biomed Opt Express       Date:  2017-04-17       Impact factor: 3.732

2.  Segmenting Retinal Blood Vessels With Deep Neural Networks.

Authors:  Pawel Liskowski; Krzysztof Krawiec
Journal:  IEEE Trans Med Imaging       Date:  2016-03-24       Impact factor: 10.048

3.  Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs.

Authors:  Varun Gulshan; Lily Peng; Marc Coram; Martin C Stumpe; Derek Wu; Arunachalam Narayanaswamy; Subhashini Venugopalan; Kasumi Widner; Tom Madams; Jorge Cuadros; Ramasamy Kim; Rajiv Raman; Philip C Nelson; Jessica L Mega; Dale R Webster
Journal:  JAMA       Date:  2016-12-13       Impact factor: 56.272

4.  Handheld Adaptive Optics Scanning Laser Ophthalmoscope.

Authors:  Theodore DuBose; Derek Nankivil; Francesco LaRocca; Gar Waterman; Kristen Hagan; James Polans; Brenton Keller; Du Tran-Viet; Lejla Vajzovic; Anthony N Kuo; Cynthia A Toth; Joseph A Izatt; Sina Farsiu
Journal:  Optica       Date:  2018-08-23       Impact factor: 11.104

5.  Imaging the photoreceptor mosaic with adaptive optics: beyond counting cones.

Authors:  Pooja Godara; Melissa Wagner-Schuman; Jungtae Rha; Thomas B Connor; Kimberly E Stepien; Joseph Carroll
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

6.  Cone and rod loss in Stargardt disease revealed by adaptive optics scanning light ophthalmoscopy.

Authors:  Hongxin Song; Ethan A Rossi; Lisa Latchney; Angela Bessette; Edwin Stone; Jennifer J Hunter; David R Williams; Mina Chung
Journal:  JAMA Ophthalmol       Date:  2015-10       Impact factor: 7.389

7.  Improved Automated Detection of Diabetic Retinopathy on a Publicly Available Dataset Through Integration of Deep Learning.

Authors:  Michael David Abràmoff; Yiyue Lou; Ali Erginay; Warren Clarida; Ryan Amelon; James C Folk; Meindert Niemeijer
Journal:  Invest Ophthalmol Vis Sci       Date:  2016-10-01       Impact factor: 4.799

8.  Images of photoreceptors in living primate eyes using adaptive optics two-photon ophthalmoscopy.

Authors:  Jennifer J Hunter; Benjamin Masella; Alfredo Dubra; Robin Sharma; Lu Yin; William H Merigan; Grazyna Palczewska; Krzysztof Palczewski; David R Williams
Journal:  Biomed Opt Express       Date:  2010-12-17       Impact factor: 3.732

9.  Deep learning based detection of cone photoreceptors with multimodal adaptive optics scanning light ophthalmoscope images of achromatopsia.

Authors:  David Cunefare; Christopher S Langlo; Emily J Patterson; Sarah Blau; Alfredo Dubra; Joseph Carroll; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2018-07-18       Impact factor: 3.562

10.  Automatic cone photoreceptor segmentation using graph theory and dynamic programming.

Authors:  Stephanie J Chiu; Yuliya Lokhnygina; Adam M Dubis; Alfredo Dubra; Joseph Carroll; Joseph A Izatt; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2013-05-22       Impact factor: 3.732

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  14 in total

1.  SPATIALLY INFORMED CNN FOR AUTOMATED CONE DETECTION IN ADAPTIVE OPTICS RETINAL IMAGES.

Authors:  Heng Jin; Jessica I W Morgan; James C Gee; Min Chen
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2020-05-22

2.  Weakly supervised individual ganglion cell segmentation from adaptive optics OCT images for glaucomatous damage assessment.

Authors:  Somayyeh Soltanian-Zadeh; Kazuhiro Kurokawa; Zhuolin Liu; Furu Zhang; Osamah Saeedi; Daniel X Hammer; Donald T Miller; Sina Farsiu
Journal:  Optica       Date:  2021-05-04       Impact factor: 11.104

3.  Intergrader agreement of foveal cone topography measured using adaptive optics scanning light ophthalmoscopy.

Authors:  Niamh Wynne; Jenna A Cava; Mina Gaffney; Heather Heitkotter; Abigail Scheidt; Jenny L Reiniger; Jenna Grieshop; Kai Yang; Wolf M Harmening; Robert F Cooper; Joseph Carroll
Journal:  Biomed Opt Express       Date:  2022-08-01       Impact factor: 3.562

4.  Adaptive optics for high-resolution imaging.

Authors:  Karen M Hampson; Raphaël Turcotte; Donald T Miller; Kazuhiro Kurokawa; Jared R Males; Na Ji; Martin J Booth
Journal:  Nat Rev Methods Primers       Date:  2021-10-14

5.  Theoretical versus empirical measures of retinal magnification for scaling AOSLO images.

Authors:  H Heitkotter; A E Salmon; R E Linderman; J Porter; J Carroll
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2021-10-01       Impact factor: 2.104

6.  Multimodal handheld adaptive optics scanning laser ophthalmoscope.

Authors:  Kristen Hagan; Theodore DuBose; David Cunefare; Gar Waterman; Jongwan Park; Corey Simmerer; Anthony N Kuo; Ryan P McNabb; Joseph A Izatt; Sina Farsiu
Journal:  Opt Lett       Date:  2020-09-01       Impact factor: 3.776

7.  Open-Source Automatic Segmentation of Ocular Structures and Biomarkers of Microbial Keratitis on Slit-Lamp Photography Images Using Deep Learning.

Authors:  Jessica Loo; Matthias F Kriegel; Megan M Tuohy; Kyeong Hwan Kim; Venkatesh Prajna; Maria A Woodward; Sina Farsiu
Journal:  IEEE J Biomed Health Inform       Date:  2021-01-05       Impact factor: 5.772

Review 8.  Adaptive optics: principles and applications in ophthalmology.

Authors:  Engin Akyol; Ahmed M Hagag; Sobha Sivaprasad; Andrew J Lotery
Journal:  Eye (Lond)       Date:  2020-11-30       Impact factor: 3.775

9.  Automated image processing pipeline for adaptive optics scanning light ophthalmoscopy.

Authors:  Alexander E Salmon; Robert F Cooper; Min Chen; Brian Higgins; Jenna A Cava; Nickolas Chen; Hannah M Follett; Mina Gaffney; Heather Heitkotter; Elizabeth Heffernan; Taly Gilat Schmidt; Joseph Carroll
Journal:  Biomed Opt Express       Date:  2021-05-07       Impact factor: 3.562

Review 10.  Promises and pitfalls of evaluating photoreceptor-based retinal disease with adaptive optics scanning light ophthalmoscopy (AOSLO).

Authors:  Niamh Wynne; Joseph Carroll; Jacque L Duncan
Journal:  Prog Retin Eye Res       Date:  2020-11-06       Impact factor: 19.704

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