| Literature DB >> 31390725 |
Ralf Duerr1, Miroslaw K Gorny2.
Abstract
Most human immunodeficiency virus (HIV) vaccine trials have lacked efficacy and empirical vaccine lead targets are scarce. Thus far, the only independent correlate of reduced risk of HIV-1 acquisition in humans is elevated levels of V2-specific antibodies identified in the modestly protective RV144 vaccine trial. Ten years after RV144, human and non-human primate vaccine studies have reassessed the potential contribution of V2-specific antibodies to vaccine efficacy. In addition, studies of natural HIV-1 infection in humans have provided insight into the development of V1V2-directed antibody responses and their impact on clinical parameters and disease progression. Functionally diverse anti-V2 monoclonal antibodies were isolated and their structurally distinct V2 epitope regions characterized. After RV144, a plethora of research studies were performed using different model systems, immunogens, protocols, and challenge viruses. These diverse studies failed to provide a clear picture regarding the contribution of V2 antibodies to vaccine efficacy. Here, we summarize the biological functions and clinical findings associated with V2-specific antibodies and discuss their impact on HIV vaccine research.Entities:
Keywords: HIV-1; V2 antibodies; correlates of disease progression; correlates of protection; functional immune response; immunogenicity; natural infection; non-human primates; vaccine design
Year: 2019 PMID: 31390725 PMCID: PMC6789775 DOI: 10.3390/vaccines7030082
Source DB: PubMed Journal: Vaccines (Basel) ISSN: 2076-393X
Figure 1Phylogenetic diversity and aa distance analysis of diverse HIV-1 clades, HIV-2 and SIV. (Top): maximum likelihood phylogenetic trees of Env (left) and V1V2 (right) aa consensus sequences of major HIV-1 clades, HIV-2, and SIV from chimpanzees (cpz) and macaques (mac). An additional consensus sequence summarizing all HIV-1 group M consensus sequences was used (HIV-1 group M con). The consensus sequences were downloaded from the Los Alamos National Library (LANL) Database, if available, or generated from the alignments of functional aa sequences that were used for Figure 2 (Consensus Maker, LANL Database). Maximum likelihood phylogenetic trees were constructed using MEGA v5.2, and the Poisson substitution model with 200 Bootstrap replicates; Bootstrap values are indicated. (Bottom): pairwise aa distance analysis between Env (left) and V1V2 (right) consensus sequences. The heatmap displays aa distances in percent, color-coded according to the scheme in the middle. The distances were calculated in MEGA v5.2 using the Neighbor-joining p-distance model.
Figure 2Comparative V1V2 sequence and epitope analysis across major HIV-1 group M clades and SIV. Sequence logo analyses are shown for the six most prevalent HIV-1 group M subtypes and circulating recombinant forms (CRF) in comparison to SIV from chimpanzees (cpz) and macaques (mac). Sequence logos were performed using the Skylign tool (skylign.org) with alignments using all functional aa sequences per virus/clade, downloaded from the LANL Sequence Database. The number of sequences used per logo is shown in parenthesis on the left (n). V1 and V2 loops, their hypervariable regions, and the β-barrel (top; native closed Env; β-strands labeled with A, B, C, C’, and D) versus α-helical conformation (bottom; open Env) are indicated by the schematic at top. The integrin binding site and V1V2 Ab epitopes are indicated with colored lines below the sequence logos according to the box on the lower left. The full set of epitopes is shown for HIV-1 subtype A representatively. Additional cysteines in SIV are highlighted with purple arrows. A dark blue field below the stack of aa indicates occupancy 75% for the respective site. Sites with 5% occupancy were removed from the sequence logos for better clarity. Functionally important aa positions are highlighted: asparagines of the potential N-glycosylation sites N156 and N160 are labeled in green and highlighted with a gray background; sites of immune pressure in RV144 [7], i.e., positions 169 and 181, are labeled and highlighted with an orange background. Epitope and structural regions are indicated according to reference papers and the LANL Immunology Database (Section 2) [22,46,47].
Figure 3Conformational plasticity of the variable V1V2 region and structural requirements for the binding of different V1V2-specific Abs. (a) Trimeric architecture of HIV-1 Env in a closed (pdb 3J5M, Env derived from a PGV04 Fab-stabilized SOSIP co-structure [46]) and an open conformation (pdb 5VN8, Env derived from a b12 Fab-stabilized SOSIP co-structure [52]). Env regions are colored as indicated in the legend; e.g., V1V2 regions are shown in red and V3 regions in yellow. Key V1V2 residues are labeled in one protomer: conserved N-glycosylation sites N156 and N160 are shown in stick representation and sites of immune pressure in RV144 as spheres, i.e., aa 169 and aa 181, the latter being part of the integrin binding site (IBS). Boxed: magnification of V1V2 regions with encircled antigenic V1V2 regions, shown for “closed Env” in preferential β-sheet conformation (left, pdb 3U4E, V1V2 derived from a PG9-stabilized co-structure [53]) and for “open Env” in preferential α-helical conformation (right, pdb 6FY1, V1V2 derived from a CAP228-16H-stabilized co-structure [22]). V1 and V2 loops, gp120 stumps, and the β-sheets A-D are indicated. The binding pattern of different V2 Ab classes is schematically shown with colored ovals and arrows. mAb-bound V1V2 co-structures are displayed in additional boxes. For the V1V2 β-barrel conformation (left) an overlay was generated for PGT145 mAb-bound V1V2 (pdb 5V8L [54]), PG9 mAb-bound V1V2 (pdb 3U4E), and 830 mAb-bound V1V2 (pdb 4YWG [47]) using Matchmaker in Chimera v.1.13.1 (matching restricted to V1V2 regions). Schematics of key regions were manually added if structurally not resolved, i.e., β-strand C’ (arrow), some V1 and V2 loops (red dashed lines), and some aa 169 and 181 residues (spheres). (b) Secondary structural content of V1V2 and preferential binding patterns of the different V2 Ab classes to the native/closed versus open Env conformations. Epitope accessibility/binding strength of respective Ab classes is scaled as follows: − absent, + weak, ++ strong, +++ very strong. Parentheses indicate variation within a class. V2 Ab epitopes: V2q: quaternary, V2qt: quaternary and trimer-dependent, V2i: conformational epitope including the IBS, V2p: linear (peptide) epitope. Quantification was done according to reference papers (Section 2.1, Section 2.2 and Section 2.3). SOSIP: soluble, stabilized HIV Env trimers with an additionally introduced disulfide bond (“SOS”) and an isoleucine to proline mutation (“IP”).
Ab effector functions according to V1V2 Ab class.
| V2 Ab Class/Effector Functions 1 | V2qt | V2q | V2i | V2p |
|---|---|---|---|---|
| Neutralization | +++ | +++ | +(+) | (+) |
| viral capture | +++ | +++ | +(+) | + |
| ADCC | + | + | + | + |
| ADCP | + | + | + | n.a. |
| α4β7 inhibition | − | − | (+) | ++ |
1 Quantification of effector functions from − absent to + weak, ++ intermediate and +++ strong. Parentheses indicate variation within the Ab class. Quantification according to reference papers as described in Section 2.2; n.a.: no data available.
Human HIV-1 vaccine efficacy trials and outcome.
| # | Trial | Vaccine | Year | Location/Clades/Target Population | Study Number | Ref | Result/Protection | Immune Correlates | V2 Ab Response |
|---|---|---|---|---|---|---|---|---|---|
| I | VAX003 | AIDSVAX | 2003 | Thailand | 2546 | [ | No efficacy | - | Yes, RV144-like, peak Ab responses after 3–4 immunizations, but waning after 5–7 immunizations; relative enhancement of IgG2 and IgG4 responses with limited antiviral functionality |
| II | VAX004 | AIDSVAX | 2003 | USA, Canada, Puerto Rico, Netherlands | 5417 | [ | No efficacy | - | Yes, lower frequency and titers compared to VAX003 and RV144 |
| III | STEP | MRK-Ad5 B | 2007 | North America, the Caribbean, South America, Australia | 3000 | [ | No efficacy; Immunizations halted; potential for increased risk of HIV infection among Ad5-seropositive, uncircumcised men. | - | No |
| IV | Phambili | MRK-Ad5 | 2007 | South Africa | 801 | [ | Immunizations halted after eight months based on STEP trial result. | - | No |
| V | Thai Prime-Boost/ | ALVAC-HIV (vCP1521) 01_AE (TH023), | 2009 | Thailand | 16,402 | [ | Yes, | High titers of V2i and V2p Abs, | Yes, |
| VI | HVTN 505 | DNA | 2013 | USA | 2500 | [ | No efficacy; Immunizations halted; no prevention of HIV infection nor reduction of viral load among vaccine recipients who became HIV infected. | - | Low titers and frequency |
| VII | HVTN702 | RV144-like, | Ongoing, 2016–2021 | South Africa | 5400 |
| |||
| VIII | HVTN 705/HPX2008 | Ad26 Mosaic (4x) HIV ( | Ongoing, 2017–2022 | South Africa | 2600 |
| |||
IDU: Injecting drug user, MSM: Men who have sex with men, y: years.
Non-human primate vaccine studies with SHIV or SIV challenges.
| # | Author | Immunization | Challenge | % Protection | Immune Correlates | V2 Antigens Tested | V2 Abs Correlation |
|---|---|---|---|---|---|---|---|
|
| |||||||
| 1 | Barouch DH | Ad/MVA (mosaic) | SHIVSF162P3 | 3 chall. 45% | Env Abs | V2 peptides | NO |
| 2 | Bradley T | ALVAC/Pentavalent | SHIV1157 | 55% | Cell-bound Env Abs, | V2 peptides | NO |
| 3 | Barouch DH | Ad26, gp140 | SHIVSF162P3 | 67% | Env Abs | V1V2-gp70 | NO |
| 4 | Malherbe DC | Replicating SAd7 | SHIV157ipEL | Sad—40% | V2 Abs (SAd7) | V1V2 recombinant | YES—SAd7 |
| 5 | Hessell A/Gorny MK | DNA gp160, AE | SHIVBaL.P4 | 55% | SHIV capture Abs | V1V2 scaffolds | NO |
| 6 | Hessell A/Gorny MK | DNA V1V2, AE | SHIVBaL.P4 | 45% | Not determined yet | V1V2 scaffolds | NO |
|
| |||||||
| 7 | Barouch DH | Ad/poxvirus | SIVmac251 | 80% | Env Abs | V2 peptide | YES |
| 8 | Roederer M | DNA/Ad5 | SIVmac660 | Vaccine efficacy: 69% (mac239) | Env Abs (C3, CD4bs) | V1V2mac239 | YES |
| 9 | Singh S. | DNA, gp120 | SIVsmE660 | 0% | Neutral. SIVsm660 | V1V2-gp70 | YES |
| 10 | Pegu P. | ALVAC, gp120 | SIVmac251 | 27% | Env Abs avidity | V2 peptides | YES |
| 11 | Gordon SN. | HPV, ALVAC, | SIVmac251 | 25% | Env-T cells | V1V2 mini protein | YES |
| 12 | Gordon SN | ALVAC, gp120 | SIVmac251 | 44% | Only V2 Abs | V1V2-gp70 | YES |
| 13 | Kwa S | CD40L DNA | SIVmac251 | 50% | V2p Abs, gp41 Abs, V1 | V2 peptides | YES |
| 14 | Vaccari M. | ALVAC, gp120 | SIVmac251 | 44% (alum) | Mucosal NKp44+IL17 | V1V2-gp70 | YES (Alum, mucosal V2) |
| 15 | Vaccari M | ALVAC, DNA, | SIVmac251 | 52% | Activation CD14 monocytes | V2 peptides | YES |