Literature DB >> 25526306

Antibody light-chain-restricted recognition of the site of immune pressure in the RV144 HIV-1 vaccine trial is phylogenetically conserved.

Kevin Wiehe1, David Easterhoff2, Kan Luo2, Nathan I Nicely2, Todd Bradley2, Frederick H Jaeger2, S Moses Dennison2, Ruijun Zhang2, Krissey E Lloyd2, Christina Stolarchuk2, Robert Parks2, Laura L Sutherland2, Richard M Scearce2, Lynn Morris3, Jaranit Kaewkungwal4, Sorachai Nitayaphan5, Punnee Pitisuttithum4, Supachai Rerks-Ngarm6, Faruk Sinangil7, Sanjay Phogat8, Nelson L Michael9, Jerome H Kim9, Garnett Kelsoe2, David C Montefiori2, Georgia D Tomaras2, Mattia Bonsignori2, Sampa Santra10, Thomas B Kepler11, S Munir Alam2, M Anthony Moody2, Hua-Xin Liao2, Barton F Haynes12.   

Abstract

In HIV-1, the ability to mount antibody responses to conserved, neutralizing epitopes is critical for protection. Here we have studied the light chain usage of human and rhesus macaque antibodies targeted to a dominant region of the HIV-1 envelope second variable (V2) region involving lysine (K) 169, the site of immune pressure in the RV144 vaccine efficacy trial. We found that humans and rhesus macaques used orthologous lambda variable gene segments encoding a glutamic acid-aspartic acid (ED) motif for K169 recognition. Structure determination of an unmutated ancestor antibody demonstrated that the V2 binding site was preconfigured for ED motif-mediated recognition prior to maturation. Thus, light chain usage for recognition of the site of immune pressure in the RV144 trial is highly conserved across species. These data indicate that the HIV-1 K169-recognizing ED motif has persisted over the diversification between rhesus macaques and humans, suggesting an evolutionary advantage of this antibody recognition mode.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25526306      PMCID: PMC4324565          DOI: 10.1016/j.immuni.2014.11.014

Source DB:  PubMed          Journal:  Immunity        ISSN: 1074-7613            Impact factor:   31.745


  44 in total

1.  IMGT, the international ImMunoGeneTics database.

Authors:  M P Lefranc
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Role of BCR affinity in T cell dependent antibody responses in vivo.

Authors:  Tien-An Yang Shih; Eric Meffre; Mario Roederer; Michel C Nussenzweig
Journal:  Nat Immunol       Date:  2002-05-20       Impact factor: 25.606

3.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

4.  A group M consensus envelope glycoprotein induces antibodies that neutralize subsets of subtype B and C HIV-1 primary viruses.

Authors:  Hua-Xin Liao; Laura L Sutherland; Shi-Mao Xia; Mary E Brock; Richard M Scearce; Stacie Vanleeuwen; S Munir Alam; Mildred McAdams; Eric A Weaver; Zenaido Camacho; Ben-Jiang Ma; Yingying Li; Julie M Decker; Gary J Nabel; David C Montefiori; Beatrice H Hahn; Bette T Korber; Feng Gao; Barton F Haynes
Journal:  Virology       Date:  2006-09-30       Impact factor: 3.616

5.  The role of antibody polyspecificity and lipid reactivity in binding of broadly neutralizing anti-HIV-1 envelope human monoclonal antibodies 2F5 and 4E10 to glycoprotein 41 membrane proximal envelope epitopes.

Authors:  S Munir Alam; Mildred McAdams; David Boren; Michael Rak; Richard M Scearce; Feng Gao; Zenaido T Camacho; Daniel Gewirth; Garnett Kelsoe; Pojen Chen; Barton F Haynes
Journal:  J Immunol       Date:  2007-04-01       Impact factor: 5.422

6.  Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:  Richard A Gibbs; Jeffrey Rogers; Michael G Katze; Roger Bumgarner; George M Weinstock; Elaine R Mardis; Karin A Remington; Robert L Strausberg; J Craig Venter; Richard K Wilson; Mark A Batzer; Carlos D Bustamante; Evan E Eichler; Matthew W Hahn; Ross C Hardison; Kateryna D Makova; Webb Miller; Aleksandar Milosavljevic; Robert E Palermo; Adam Siepel; James M Sikela; Tony Attaway; Stephanie Bell; Kelly E Bernard; Christian J Buhay; Mimi N Chandrabose; Marvin Dao; Clay Davis; Kimberly D Delehaunty; Yan Ding; Huyen H Dinh; Shannon Dugan-Rocha; Lucinda A Fulton; Ramatu Ayiesha Gabisi; Toni T Garner; Jennifer Godfrey; Alicia C Hawes; Judith Hernandez; Sandra Hines; Michael Holder; Jennifer Hume; Shalini N Jhangiani; Vandita Joshi; Ziad Mohid Khan; Ewen F Kirkness; Andrew Cree; R Gerald Fowler; Sandra Lee; Lora R Lewis; Zhangwan Li; Yih-Shin Liu; Stephanie M Moore; Donna Muzny; Lynne V Nazareth; Dinh Ngoc Ngo; Geoffrey O Okwuonu; Grace Pai; David Parker; Heidie A Paul; Cynthia Pfannkoch; Craig S Pohl; Yu-Hui Rogers; San Juana Ruiz; Aniko Sabo; Jireh Santibanez; Brian W Schneider; Scott M Smith; Erica Sodergren; Amanda F Svatek; Teresa R Utterback; Selina Vattathil; Wesley Warren; Courtney Sherell White; Asif T Chinwalla; Yucheng Feng; Aaron L Halpern; Ladeana W Hillier; Xiaoqiu Huang; Pat Minx; Joanne O Nelson; Kymberlie H Pepin; Xiang Qin; Granger G Sutton; Eli Venter; Brian P Walenz; John W Wallis; Kim C Worley; Shiaw-Pyng Yang; Steven M Jones; Marco A Marra; Mariano Rocchi; Jacqueline E Schein; Robert Baertsch; Laura Clarke; Miklós Csürös; Jarret Glasscock; R Alan Harris; Paul Havlak; Andrew R Jackson; Huaiyang Jiang; Yue Liu; David N Messina; Yufeng Shen; Henry Xing-Zhi Song; Todd Wylie; Lan Zhang; Ewan Birney; Kyudong Han; Miriam K Konkel; Jungnam Lee; Arian F A Smit; Brygg Ullmer; Hui Wang; Jinchuan Xing; Richard Burhans; Ze Cheng; John E Karro; Jian Ma; Brian Raney; Xinwei She; Michael J Cox; Jeffery P Demuth; Laura J Dumas; Sang-Gook Han; Janet Hopkins; Anis Karimpour-Fard; Young H Kim; Jonathan R Pollack; Tomas Vinar; Charles Addo-Quaye; Jeremiah Degenhardt; Alexandra Denby; Melissa J Hubisz; Amit Indap; Carolin Kosiol; Bruce T Lahn; Heather A Lawson; Alison Marklein; Rasmus Nielsen; Eric J Vallender; Andrew G Clark; Betsy Ferguson; Ryan D Hernandez; Kashif Hirani; Hildegard Kehrer-Sawatzki; Jessica Kolb; Shobha Patil; Ling-Ling Pu; Yanru Ren; David Glenn Smith; David A Wheeler; Ian Schenck; Edward V Ball; Rui Chen; David N Cooper; Belinda Giardine; Fan Hsu; W James Kent; Arthur Lesk; David L Nelson; William E O'brien; Kay Prüfer; Peter D Stenson; James C Wallace; Hui Ke; Xiao-Ming Liu; Peng Wang; Andy Peng Xiang; Fan Yang; Galt P Barber; David Haussler; Donna Karolchik; Andy D Kern; Robert M Kuhn; Kayla E Smith; Ann S Zwieg
Journal:  Science       Date:  2007-04-13       Impact factor: 47.728

7.  Broadly neutralizing antibodies targeted to the membrane-proximal external region of human immunodeficiency virus type 1 glycoprotein gp41.

Authors:  M B Zwick; A F Labrijn; M Wang; C Spenlehauer; E O Saphire; J M Binley; J P Moore; G Stiegler; H Katinger; D R Burton; P W Parren
Journal:  J Virol       Date:  2001-11       Impact factor: 5.103

8.  High-throughput isolation of immunoglobulin genes from single human B cells and expression as monoclonal antibodies.

Authors:  Hua-Xin Liao; Marc C Levesque; Ashleigh Nagel; Ashlyn Dixon; Ruijun Zhang; Emmanuel Walter; Robert Parks; John Whitesides; Dawn J Marshall; Kwan-Ki Hwang; Yi Yang; Xi Chen; Feng Gao; Supriya Munshaw; Thomas B Kepler; Thomas Denny; M Anthony Moody; Barton F Haynes
Journal:  J Virol Methods       Date:  2009-02-21       Impact factor: 2.014

Review 9.  Tyrosine sulfation: an increasingly recognised post-translational modification of secreted proteins.

Authors:  Martin J Stone; Sara Chuang; Xu Hou; Menachem Shoham; John Z Zhu
Journal:  N Biotechnol       Date:  2009-06       Impact factor: 5.079

10.  Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard.

Authors:  Thomas C Terwilliger; Ralf W Grosse-Kunstleve; Pavel V Afonine; Nigel W Moriarty; Peter H Zwart; Li Wei Hung; Randy J Read; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  41 in total

1.  A Therapeutic Antibody for Cancer, Derived from Single Human B Cells.

Authors:  Ryan T Bushey; M Anthony Moody; Nathan L Nicely; Barton F Haynes; S Munir Alam; Stephen T Keir; Rex C Bentley; Kingshuk Roy Choudhury; Elizabeth B Gottlin; Michael J Campa; Hua-Xin Liao; Edward F Patz
Journal:  Cell Rep       Date:  2016-05-05       Impact factor: 9.423

2.  Tissue memory B cell repertoire analysis after ALVAC/AIDSVAX B/E gp120 immunization of rhesus macaques.

Authors:  Kan Luo; Hua-Xin Liao; Ruijun Zhang; David Easterhoff; Kevin Wiehe; Thaddeus C Gurley; Lawrence C Armand; Ashley A Allen; Tarra A Von Holle; Dawn J Marshall; John F Whitesides; Jamie Pritchett; Andrew Foulger; Giovanna Hernandez; Robert Parks; Krissey E Lloyd; Christina Stolarchuk; Sheetal Sawant; Jessica Peel; Nicole L Yates; Erika Dunford; Sabrina Arora; Amy Wang; Cindy M Bowman; Laura L Sutherland; Richard M Scearce; Shi-Mao Xia; Mattia Bonsignori; Justin Pollara; R Whitney Edwards; Sampa Santra; Norman L Letvin; James Tartaglia; Donald Francis; Faruk Sinangil; Carter Lee; Jaranit Kaewkungwal; Sorachai Nitayaphan; Punnee Pitisuttithum; Supachai Rerks-Ngarm; Nelson L Michael; Jerome H Kim; S Munir Alam; Nathan A Vandergrift; Guido Ferrari; David C Montefiori; Georgia D Tomaras; Barton F Haynes; M Anthony Moody
Journal:  JCI Insight       Date:  2016-12-08

3.  HIV vaccine delayed boosting increases Env variable region 2-specific antibody effector functions.

Authors:  David Easterhoff; Justin Pollara; Kan Luo; Benjamin Janus; Neelakshi Gohain; LaTonya D Williams; Matthew Zirui Tay; Anthony Monroe; Kristina Peachman; Misook Choe; Susie Min; Paolo Lusso; Peng Zhang; Eden P Go; Heather Desaire; Mattia Bonsignori; Kwan-Ki Hwang; Charles Beck; Matina Kakalis; Robert J O'Connell; Sandhya Vasan; Jerome H Kim; Nelson L Michael; Jean-Louis Excler; Merlin L Robb; Supachai Rerks-Ngarm; Jaranit Kaewkungwal; Punnee Pitisuttithum; Sorachai Nitayaphan; Faruk Sinangil; James Tartaglia; Sanjay Phogat; Kevin Wiehe; Kevin O Saunders; David C Montefiori; Georgia D Tomaras; M Anthony Moody; James Arthos; Mangala Rao; M Gordon Joyce; Gilad Ofek; Guido Ferrari; Barton F Haynes
Journal:  JCI Insight       Date:  2020-01-30

4.  Short Communication: Small-Molecule CD4 Mimetics Sensitize HIV-1-Infected Cells to Antibody-Dependent Cellular Cytotoxicity by Antibodies Elicited by Multiple Envelope Glycoprotein Immunogens in Nonhuman Primates.

Authors:  Shilei Ding; Myriam M Verly; Amy Princiotto; Bruno Melillo; Anthony M Moody; Todd Bradley; David Easterhoff; Michel Roger; Beatrice H Hahn; Navid Madani; Amos B Smith; Barton F Haynes; Joseph Sodroski; Andrés Finzi
Journal:  AIDS Res Hum Retroviruses       Date:  2016-12-19       Impact factor: 2.205

5.  HIV-1 Envelope Mimicry of Host Enzyme Kynureninase Does Not Disrupt Tryptophan Metabolism.

Authors:  Todd Bradley; Guang Yang; Olga Ilkayeva; T Matt Holl; Ruijun Zhang; Jinsong Zhang; Sampa Santra; Christopher B Fox; Steve G Reed; Robert Parks; Cindy M Bowman; Hilary Bouton-Verville; Laura L Sutherland; Richard M Scearce; Nathan Vandergrift; Thomas B Kepler; M Anthony Moody; Hua-Xin Liao; S Munir Alam; Roger McLendon; Jeffrey I Everitt; Christopher B Newgard; Laurent Verkoczy; Garnett Kelsoe; Barton F Haynes
Journal:  J Immunol       Date:  2016-11-14       Impact factor: 5.422

6.  Structural Constraints of Vaccine-Induced Tier-2 Autologous HIV Neutralizing Antibodies Targeting the Receptor-Binding Site.

Authors:  Todd Bradley; Daniela Fera; Jinal Bhiman; Leila Eslamizar; Xiaozhi Lu; Kara Anasti; Ruijung Zhang; Laura L Sutherland; Richard M Scearce; Cindy M Bowman; Christina Stolarchuk; Krissey E Lloyd; Robert Parks; Amanda Eaton; Andrew Foulger; Xiaoyan Nie; Salim S Abdool Karim; Susan Barnett; Garnett Kelsoe; Thomas B Kepler; S Munir Alam; David C Montefiori; M Anthony Moody; Hua-Xin Liao; Lynn Morris; Sampa Santra; Stephen C Harrison; Barton F Haynes
Journal:  Cell Rep       Date:  2015-12-24       Impact factor: 9.423

7.  Vaccine Elicitation of High Mannose-Dependent Neutralizing Antibodies against the V3-Glycan Broadly Neutralizing Epitope in Nonhuman Primates.

Authors:  Kevin O Saunders; Nathan I Nicely; Kevin Wiehe; Mattia Bonsignori; R Ryan Meyerhoff; Robert Parks; William E Walkowicz; Baptiste Aussedat; Nelson R Wu; Fangping Cai; Yusuf Vohra; Peter K Park; Amanda Eaton; Eden P Go; Laura L Sutherland; Richard M Scearce; Dan H Barouch; Ruijun Zhang; Tarra Von Holle; R Glenn Overman; Kara Anasti; Rogier W Sanders; M Anthony Moody; Thomas B Kepler; Bette Korber; Heather Desaire; Sampa Santra; Norman L Letvin; Gary J Nabel; David C Montefiori; Georgia D Tomaras; Hua-Xin Liao; S Munir Alam; Samuel J Danishefsky; Barton F Haynes
Journal:  Cell Rep       Date:  2017-02-28       Impact factor: 9.423

8.  Rapid Development of gp120-Focused Neutralizing B Cell Responses during Acute Simian Immunodeficiency Virus Infection of African Green Monkeys.

Authors:  Joshua D Amos; Jonathon E Himes; Lawrence Armand; Thaddeus C Gurley; David R Martinez; Lisa Colvin; Krista Beck; R Glenn Overman; Hua-Xin Liao; M Anthony Moody; Sallie R Permar
Journal:  J Virol       Date:  2015-07-08       Impact factor: 5.103

9.  HIV-1 VACCINES. Diversion of HIV-1 vaccine-induced immunity by gp41-microbiota cross-reactive antibodies.

Authors:  Wilton B Williams; Hua-Xin Liao; M Anthony Moody; Thomas B Kepler; S Munir Alam; Feng Gao; Kevin Wiehe; Ashley M Trama; Kathryn Jones; Ruijun Zhang; Hongshuo Song; Dawn J Marshall; John F Whitesides; Kaitlin Sawatzki; Axin Hua; Pinghuang Liu; Matthew Z Tay; Kelly E Seaton; Xiaoying Shen; Andrew Foulger; Krissey E Lloyd; Robert Parks; Justin Pollara; Guido Ferrari; Jae-Sung Yu; Nathan Vandergrift; David C Montefiori; Magdalena E Sobieszczyk; Scott Hammer; Shelly Karuna; Peter Gilbert; Doug Grove; Nicole Grunenberg; M Juliana McElrath; John R Mascola; Richard A Koup; Lawrence Corey; Gary J Nabel; Cecilia Morgan; Gavin Churchyard; Janine Maenza; Michael Keefer; Barney S Graham; Lindsey R Baden; Georgia D Tomaras; Barton F Haynes
Journal:  Science       Date:  2015-07-30       Impact factor: 47.728

10.  Initiation of immune tolerance-controlled HIV gp41 neutralizing B cell lineages.

Authors:  Ruijun Zhang; Laurent Verkoczy; Kevin Wiehe; S Munir Alam; Nathan I Nicely; Sampa Santra; Todd Bradley; Charles W Pemble; Jinsong Zhang; Feng Gao; David C Montefiori; Hilary Bouton-Verville; Garnett Kelsoe; Kevin Larimore; Phillip D Greenberg; Robert Parks; Andrew Foulger; Jessica N Peel; Kan Luo; Xiaozhi Lu; Ashley M Trama; Nathan Vandergrift; Georgia D Tomaras; Thomas B Kepler; M Anthony Moody; Hua-Xin Liao; Barton F Haynes
Journal:  Sci Transl Med       Date:  2016-04-27       Impact factor: 17.956

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