| Literature DB >> 31017929 |
Alison L Antes1, Ashley Kuykendall1, James M DuBois1.
Abstract
INTRODUCTION: Conducting rigorous scientific inquiry within the bounds of research regulation and acceptable practice requires a principal investigator to lead and manage research processes and personnel. This study explores the practices used by investigators nominated as exemplars of research excellence and integrity to produce rigorous, reproducible research and comply with research regulations.Entities:
Mesh:
Year: 2019 PMID: 31017929 PMCID: PMC6481787 DOI: 10.1371/journal.pone.0214595
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Participant characteristics.
| No. | % | |
|---|---|---|
| Gender | ||
| Male | 37 | 71 |
| Female | 15 | 29 |
| Age | ||
| 30–39 | 2 | 4 |
| 40–49 | 12 | 23 |
| 50–59 | 20 | 39 |
| 60+ | 18 | 35 |
| Born in the United States | ||
| Yes | 38 | 73 |
| No | 14 | 27 |
| Race | ||
| White | 45 | 87 |
| Asian | 4 | 8 |
| Multiple | 2 | 4 |
| Not reported | 1 | 2 |
| Hispanic or Latino | ||
| Yes | 6 | 12 |
| No | 46 | 88 |
| Highest Academic Degree | ||
| PhD only | 37 | 71 |
| MD only | 9 | 17 |
| MD and PhD | 6 | 12 |
| Academic Rank | ||
| Associate Professor | 5 | 10 |
| Professor | 43 | 83 |
| Other (e.g., Senior Investigator; Lab Chief) | 4 | 8 |
| Type of Research | ||
| Wet Lab | 26 | 51 |
| Animal Subjects | 25 | 49 |
| Human subjects: clinical | 21 | 41 |
| Dry Lab | 13 | 25 |
| Human subjects: social or behavioral | 12 | 24 |
| Other (e.g., chemical synthesis, materials processing) | 9 | 18 |
| Discipline of Training | ||
| Biomedical Sciences (biomedical, biological, and public health) | 29 | 56 |
| STEM Science (physical sciences, psychology, and earth sciences) | 23 | 44 |
N = 52.
a13 (25%) reported English as their second language.
b84% earned in the United States.
cParticipants selected “all that apply, thus % is > 100 (43% reported 1 type, 24% reported 2 types, and 33% reported 3 or more types).
Research exemplar career and team characteristics.
| M | SD | |
|---|---|---|
| Exemplars | ||
| Number of years doing research | 28.18 | 11.89 |
| Number of research labs or groups worked in across career | 6.45 | 4.83 |
| Number of peer-reviewed publications | 137.9 | 95.95 |
| Amount of grant funding in career | $26,923,344 | $26,155,063 |
| Estimated hours worked per week | 59.81 | 9.97 |
| Research Teams | ||
| Number of personnel working in lab or research team | 12.31 | 10.06 |
| Number of projects running in lab/team at one time | 7.23 | 4.72 |
| Number of grant proposals submitted per year | 5.40 | 4.27 |
| Number of papers submitted for publications per year | 9.98 | 7.35 |
| Days per week PI works in same space or building as research team | 4.69 | 1.28 |
adefined as “years doing research that led to publications”.
bParticipants were asked to characterize “on average”.
cN = 48, as NIH intramural researchers do not seek grants.
Lab management practices fostering rigor and compliance.
| Practice | Linked Outcomes | Illustrative Quotes | No. | % |
|---|---|---|---|---|
| Hold regular team meetings | Rigor, Compliance, Relationships | “There’s nothing that’s hidden. We talk about data out loud. That lab meeting that we have each week is probably one of the most important hour to two hours that we spend together because everybody has to be able to show their raw data, everybody has to be able to talk about these difficulties.” (Participant 52) | 43 | 83 |
| “It’s very important that the projects have regular meetings; they have clear agendas, and they have clear to do lists at the end of the meeting so that people are responsible and held accountable for going to the next step.” (Participant 21) | ||||
| Encourage shared ownership and decision-making | Compliance, Relationships, Balancing demands | “So there is less of a delegation, but more of a partnership…we need to do parallel things, and that’s the way to ensure rigorousness and integrity.… So, if I read a paper and miss something, another person is also reading the paper and will miss some other things. So, together we might be able to make up a whole picture.” (Participant 5) | 38 | 73 |
| “With all of the human trial studies that we do, the students actually have to submit the IRBs and work with all of the clinicians that we’re working with…. So they’re in charge of it.… One of the biggest attributes we have…is actually giving…the sense of ownership, and once they have that sense of ownership and telling them these are the expectations, then they’re able to perform with good integrity.” (Participant 24) | ||||
| Provide supervision and guidance | Rigor, Compliance, Relationships | “Listening to the people who are in the laboratory and doing things. So if they’re running into something that’s a barrier for them, listening to what that barrier is, and number one, seeing if there’s a solution to get around that barrier, or number two, telling them why it’s there so that we have a check point.” (Participant 17) | 37 | 71 |
| “I do try to talk to all of my people every day. I think the more junior people…even if it’s just ‘good morning, do you have a good plan for what you’re going to do today?’ Even if that’s all it is, they know that, number one, I care…that I’m available for questions, comments, concerns. They know that what they’re doing is being supervised.” (Participant 41) | ||||
| Ensure sufficient training | Rigor, Compliance | “We show someone, teach them, they do it while we watch, then they do it themselves, and then they do it themselves again and we come back and check later. So part of it is in the way we train people.” (Participant 37) | 35 | 67 |
| “She [the lab manager] handles getting people to the person who’s going to train them.… Once they’re trained, they get a document from the trainer saying they know how to handle that piece of equipment and training completed is entered on the spreadsheet. So, that’s just to get started. The first few times that you do a procedure, especially in animals, like the first 5 times in animals, someone is watching…and checking off a checklist.” (Participant 34). | ||||
| Foster positive attitudes about compliance | Compliance | “I think personal relationships, not to treat the IRB as a thing but as people…getting to know them, inviting them to our lab, when we have a difficult decision, to really have them involved with us where we get their feedback.… They understand our work, and we’re open about where we have a fork in the road and getting their feedback, I think that makes a real difference.” (Participant 21). | 34 | 65 |
| “A lot of people will have, attack the messengers. I think it’s much better to be working with them, and working out protocols together and always being open and transparent about what we plan on doing.” (Participant 23) | ||||
| Scrutinize data and findings | Rigor | “I do meet with people basically weekly to look at data, and to go through data…I try very hard…if the data doesn’t show the result that I expected or wanted, to try not to react to it and personally attack the person…frequency of interacting with people around primary data is important, and being open to hear results, whatever they are, even if they’re not what you expected or wanted…” (Participant 11) | 32 | 61 |
| “You really have to have access to the raw data and you have to sit down and talk about the data interpretation with the students and make sure that you understand how they’ve reached their conclusions, how they’ve interpreted their data, any additional data that they’ve collected that they’re not showing you that might change the interpretation.” (Participant 20). | ||||
| Express values and expectations | Rigor, Compliance, Relationships | “I also let my laboratory know…it doesn’t matter how long it takes us to do something, we’re gonna do it right, because we’re going to be able to say to people we have confidence in what we do, because here’s what we’ve done to get there.” (Participant 52) | 31 | 60 |
| “…we’re strict in terms of getting the work done and that the work has to be high quality, but…I like to see the people in my lab working with a smile on their face, preferably enjoying what they do, and not feeling like I’m a task master…” (Participant 16) | ||||
| Establish and follow SOPs | Rigor, Compliance | “…there are standard operating procedures that everybody has to be familiar with, and then…making sure that not only have they read it the first time, but…go over it again…” (Participant 7) | 26 | 50 |
| “We use SOP’s for everything, absolutely everything, and people come to our lab and they’re just blown away by the fact that we have, we have a map to show you where to park.… So that just makes it easier.” (Participant 37) |
Lab management practices fostering rigor and compliance.
| Practice | Linked Outcomes | Illustrative Quotes | No. | % |
|---|---|---|---|---|
| Verify findings | Rigor | “Well, when you do an experiment you get a result, and you interpret it, and you think you know what it means.… But often your initial inclination about what the result means is not correct when you’ve done more experiments or thought about it more…that all goes to not being afraid of disproving your hypothesis because if you’re afraid to disprove it then you get a nice result, and what you want to do is make some fancy conclusions and publish your results in a fancy journal, and the motivation is not to try to disprove it. If you’re a rigorous scientist then you need to do what’s necessary to try to disprove it.” (Participant 18) | 25 | 48 |
| “I have typically another set of hands to try to reproduce what someone else has done. I need to have at least two sets of hands being able to do this and we are constantly talking about reproducibility and how one does that themselves and with someone else.” (Participant 52) | ||||
| Document procedures | Rigor | “We work at the level of good laboratory practice, which is a lot of record keeping. Making sure everything is calibrated properly and everything is measured accurately, and done with study plans, study reports, in a blinded manner, in a very exacting manner.” (Participant 34) | 23 | 44 |
| “I try to instill in all of my students to have a very high level of detail in putting down important information that later becomes an experimental procedure directly from their notebook.” (Participant 45) | ||||
| Design scientifically sound studies | Rigor | “Being very rigorous in how you develop a project and how you go about defining the experimental variables that you’re going to measure, doing appropriate control to make sure that what you think you’re seeing is as accurately supported as possible, to include appropriate statistical guidelines, to make sure you’re reproducing the findings with enough independent observations, to use as many objective criteria as possible when we are developing, forming, and analyzing the results from our experiments.” (Participant 46) | 21 | 40 |
| “We spend a lot of time talking about control experiments…the control experiments are maybe not always the most exciting experiments to do, but they’re usually the most important experiments to do, because that’s where you really begin to see what’s unique about the results that you’re putting forward.” (Participant 20) | ||||
| Coordinate the study team | Rigor | “We put the [study plan] table…up on the screen and we all look at it together, because everyone on that team will be doing a part of the research…it has to be really well orchestrated.… The devil’s in the details…many little things you can work out if the whole team is sitting together and they each have input about how they’re going to do their portion of it.” (Participant 34) | 17 | 33 |
| “Whenever we are planning an experiment we all sit down as a group and go through it and say here’s what we’re asking, here’s what we need to do, and we sort of say who’s going to do what.” (Participant 2) | ||||
| Handle data properly | Rigor | “All of the files, they’re all kept on Dropbox where everybody has access. We have a folder where all of our code is and anybody is supposed to be able to go in and grab the data and be able to run the same sort of analysis.” (Participant 8) | 16 | 31 |
| “We, of course, do regular backups and we then do backups of the backups.” (Participant 6) | ||||
| Involve multiple researchers on projects | Rigor | “…you would like to have more than one person do a particular key study…basically having collaborations within your laboratory, and that’s really one of the strong sides of my lab, that my people work with each other in many, many different angles…they see then what the results are and there’s a feedback…” (Participant 13) | 13 | 25 |
| “Having multiple team members on the same project ensures the quality of the analysis, thereby allows identification of any gaps in the scientific account.” (Participant 27) | ||||
| Share data outside the lab | Rigor | “how do you ensure integrity?…I would say presenting…bring in even the opposition, try and co-op them, but during the process itself, you should present your preliminary works at international meetings and serendipitous things can happen, people…make important criticisms or positive contributions…put the work out there to your peers from around the world.” (Participant 14) | 11 | 21 |
| “…we’re in the process of getting all of those data up there [in a data repository], available, documented so that other people can use them…so anybody else who wants to use it, if they really want to reproduce anything they have to be able to access it…get the data out that they need…so that other people can use and combine what they have with what we have, and use our code and that kind of thing to really advance science.” (Participant 8) | ||||
| Report findings completely and accurately | Rigor | “…I want a perfect, you know, description of the experimental data…it needs to be full, fully characterized…so I try as hard as I can to hold people…responsible for, you know, for getting completeness of data.” (Participant 15) | 9 | 17 |
| “Being very careful in the methodology and very clear about what methods are used.” (Participant 28) | ||||
| Advance compliance through audits | Compliance | “…we’ll do a routine check…a couple of times a year… just because we’re not perfect, they’ll reveal that there was an issue with X or there was an issue with Y…we report it to our IRB of course, that there might have been a violation to specific study procedure or a certain form wasn’t collected how we said it was going to be collected in IRB protocol, and then we identified this because of our routine checks, and then we figure out, okay, this happened, and…now how can we prevent this from happening again?” (Participant 44) | 9 | 17 |
| “There are safety inspections and that’s a part of what we do…so people are aware of that so that’s an extra motivation to make sure there’s good compliance.” (18) |