| Literature DB >> 30526523 |
Denny Miley Cárdenas1, Angie Carolina Sánchez2, Daris Angélica Rosas2, Esmeralda Rivero2, Massiel Dayana Paparoni2, Mildred Andreína Cruz2, Yeicy Paola Suárez2, Nestor Fabián Galvis2.
Abstract
BACKGROUND: Gastric Cancer is highly prevalent and deadly worldwide. In Colombia, it is the most lethal form of cancer. Some single-nucleotide polymorphisms in IL-10, IL-4, and IL-4Rα genes have been associated with an anti-inflammatory environment and a Th2 profile in detriment of the antitumor Th1 response. This research sought to detect single-nucleotide polymorphisms in promoter sequences, like - 1082 (G/A), - 592 (C/A), and - 819 (C/T), as well as - 590 (C/T) of the IL-10 and IL-4 genes, respectively; in addition to the IL-4Rα mutation variants, Ile50Val and Q576R, together with circulating levels of IL-4, TNF-α, IL-10, and IFN-γ in patients with gastric carcinoma in Cúcuta, Colombia.Entities:
Keywords: Cytokines; Genetic polymorphism; Neoplasia
Mesh:
Substances:
Year: 2018 PMID: 30526523 PMCID: PMC6288868 DOI: 10.1186/s12876-018-0913-9
Source DB: PubMed Journal: BMC Gastroenterol ISSN: 1471-230X Impact factor: 3.067
SNP analysis of human cytokines and IL-4Rα
| SNPa | Cytokine (Promoter/coding sequence) | Restriction enzyme | Genotypes (band size) | ||
|---|---|---|---|---|---|
| Wild homozygous | Heterozygous | Homozygous for mutation | |||
| - 592 (A/C) | IL-10 | RSA I | 175 and 237 bpb | 412, 175 and 237 bp | 412 bp |
| - 819 (T/C) | IL-10 | Mae III | 209 bp | 209, 125 and 84 bp | 125 and 84 bp |
| - 1082(G/A) | IL-10 | Mnl I | 139 bp | 139, 106 and 33 bp | 106 and 33 bp |
| .- 590 (C/T) | IL-4 | BsmFI (FaqI) | 192 and 60 bp | 252, 192 and 60 bp | 252 bp |
| Ile50Val | IL-4Rα | RsaI | 273 bp | 273, 254 and 19 bp | 254 and 19 bp |
| Q576R | IL-4Rα | MspI | 107 and 16 bp | 107, 89, 18 and 16 bp | 89, 18 and 16 bp |
aSingle-Nucleotide Polymorphism; b Base pairs
Descriptive data of the population
| Variable | Patients’ Groupa | Healthy donors’ Group (%) ( | ||
|---|---|---|---|---|
| Sex | Female | 5 (29.4) | 7 (23.4) | |
| Male | 12 (70.6) | 23 (76.6) | ||
| Age (years) | Mean | 61.8 | 63.5 | |
| Range | (34–90) | (33–82) | ||
| Tumour stageb (Borrmann classification) | I | 0 | Does not apply | |
| II | 5 (38.4) | |||
| III | 4 (30.8) | |||
| IV | 4 (30.8) | |||
| Tumour typeb (Lauren classification) | Intestinal-type | Poorly differentiated | 3 (23.0) | |
| Moderately differentiated | 3 (23.0) | |||
| Well differentiated | 3 (23.0) | |||
| Diffuse | 1 (8.0) | |||
| Not specified | 3 (23.0) | |||
| Metastasisb | None | 7 (53.8) | ||
| Lymphoid nodules (only) | 0 | |||
| Other organs | 5 (38.5) | |||
| Both | 1 (7.7) | |||
| Clinical evolutionb (Four years later) | Remission (alive) | 7 (53.8) | ||
| Deceased | 6 (46.2) | |||
| Survival Post diagnosisb,g Average (range, months) | IL-4 low levelb,c | Overall | 6 (46.2); 33.2 (1–47) | |
| Deceased (only) | 2 (33.3)d; 13.5 (1–26) | |||
| IL-4 high levelb,e | Overall | 7 (53.8); 26.4 (10–48) | ||
| Deceased (only) | 4 (57.1)f; 13.0 (10–18) | |||
| Absence of IL-10 -1082 (G/A) SNPg | Overall | 4 (40); 38.8 (26–42) | ||
| Deceased (only) | 1 (25)h; 26.0 | |||
| Presence of IL-10 -1082 (G/A) SNP | Overall | 6 (60); 21.7 (1–47) | ||
| Deceased (only) | 4 (66.7)i; 10.3 (1–18) | |||
aCases with data, n = 17; b Cases with data, n = 13. Data on patients not provided are subject to Institutional policies in keeping with National Legislation on Habeas data); c Less than 5 pg/mL; d Regarding the totality of patients with low level of IL-4; e Greater than 5 pg/mL (all cases above 12 pg/mL); f Regarding the totality of patients with high level of IL-4; g n = 10 (three cases showed no amplification band); h Regarding the totality of patients with Absence of IL-10 -1082 (G/A) SNP; i Regarding the totality of patients with Presence of IL-10 -1082 (G/A) SNP
Association measures according to variables of interest
| Variable | Cases | Controls | ORa (95% CIb) not adjusted | OR (95% CI) ajusted | |
|---|---|---|---|---|---|
| IL-4 -590 (C/T) SNP (%) | |||||
| Mutatedc | 12 (80.0) | 18 (90.0) | 0.44 (0.06–3.07) | 0.21 (0.02–2.20) | 0.195 |
| Wild | 3 (20.0) | 2 (10.0) | |||
| IL-4 Ile50Val SNP (%) | |||||
| Mutated | (0.00) | (0.00) | dnad | dna | 1.000 |
| Wild | 17 (100.0) | 30(100.0) | |||
| IL-4 Q576R SNP (%) | |||||
| Mutated | 7 (41.2) | 13 (43.3) | 0.91 (0.17–3.01) | 1.40 (0.37–5.57) | 0.601 |
| Wild | 10 (58.8) | 17 (56.7) | |||
| IL-10 -592(A/C) SNP (%) | |||||
| Homozygous for mutation | 8 (50.0) | 14 (48.3) | 1.00 (0.32–3.63) | 1.00 (0.29–3.77) | 0.949 |
| Heterozygous | 8 (50.0) | 15 (51.7) | |||
| IL-10 -819(T/C) SNP (%) | |||||
| Mutated | 14 (93.3) | 27 (90.0) | 1.55 (0.15–16.37) | 1.50 (0.13–17.18) | 0.740 |
| Wild | 1 (6.7) | 3 (10.0) | |||
| IL-10 -1082 (G/A) SNP (%) | |||||
| Mutated | 6 (50.0) | 3 (25.0) | 3.00 (0.56–16.89) | 7.58 (0.77–74.06) | 0.080 |
| Wild | 6 (50.0) | 9 (75.0) | |||
| IL-4/IL-4Rα SNPs (%) | |||||
| (≥ 2 mutations) | 5 (29.4) | 7 (23.3) | 1.37 (0.36–5.24) | 1.35 (0.34–5.37) | 0.673 |
| (< 2 mutations) | 12 (70.6) | 23 (76.7) | |||
| IL-10 Haplotype (%) | |||||
| (≥ 2 mutations) | 14 (87.5) | 26 (86.7) | 1.08 (0.17–6.63) | 1.08 (0.15–7.42) | 0.940 |
| (< 2 mutations) | 2 (12.5) | 4 (13.3) |
aOdds ratio; b Confidence interval; c Mutated (heterozygous, homozygous) d Does not apply
Fig. 1Level of peripheral blood circulating cytokines. The amount of cytokines (pg/mL) is shown: a IL-4; (b). TNF-α; (c). IL-10, and (b). IFN-γ in serum from patients with gastric carcinoma, GC (pink filled circles represent each individual) and in healthy population (green empty diamonds per individual). The line corresponds to the median value. *(P < 0.05) Statistical significance; **(P < 0.01), a very significant value, using the Mann-Whitney U test
Circulating cytokines in subgroups of patients with Gastric Cancer-New Diagnosis (Untreated versus Treated).
| IL-4 (pg/mL) | TNF-α (pg/mL) | IL-10 (pg/mL) | IFN-γ (pg/mL) | |||||
|---|---|---|---|---|---|---|---|---|
| UTa | Tb | UT | T | UT | T | UT | T | |
| Median | 7.25 | 3.25 | 3.75 | 5.50 | 48.00 | 27.50 | 18.00 | 0.00 |
| Range | 0–16 | 0–16 | 0–25 | 0–58 | 0–89 | 13–76 | 0–113 | 0–72 |
| 0.915 | 0.661 | 0.431 | 0.157 | |||||
|
| 0.795 | 0.377 | 0.281 | |||||
aUntreated case; b Treated. Case
Coding of included variables
| Variables | Category | Frequency | Codinga |
|---|---|---|---|
| Age | ≤ 50 | 2 | 0 |
| > 50 | 11 | 1 | |
| Sex | Female | 4 | 0 |
| Male | 9 | 1 | |
| IL-4 pg/mL (level) | Low | 6 | 0 |
| High | 7 | 1 | |
| IL-10 -1082 (G/A) SNP (Presence) | Absent | 7 | 0 |
| Present | 6 | 1 | |
| Stage | II | 5 | 0 |
| III y IV | 8 | 1 | |
| Metastasıs | No | 7 | 0 |
| Yes | 6 | 1 |
a The “enter” method was used to classify the results in “dummy” variables and to codify the results of a variable obtained
Model summary (multivariate analysis)
| Varıable | B | E.T. | Wald | gl | Sig. | Exp(B)a |
|---|---|---|---|---|---|---|
| Age(1) | 40,3 | 33,215,2 | 0,000 | 1 | 0,999 | 3,E+ 17 |
| Sex(1) | 0,7 | 24,452,9 | 0,000 | 1 | 1000 | 2,1 |
| Soluble IL-4 (1) | 21,1 | 22,579,3 | 0,000 | 1 | 0,999 | 1,E+ 09 |
| IL-10 -1082 (G/A) SNP (1) | 0,8 | 33,900,2 | 0,000 | 1 | 1000 | 2,3 |
| Stage (1) | 61,6 | 44,398,0 | 0,000 | 1 | 0,999 | 6,E+ 26 |
| Metastasıs(1) | −21,7 | 53,922,6 | 0,000 | 1 | 1000 | 0,0 |
| Constant | −81,7 | 50,227,5 | 0,000 | 1 | 0,999 | 0,0 |
aEstimated values for the OR