Literature DB >> 30390048

Autism spectrum disorder: insights into convergent mechanisms from transcriptomics.

Mathieu Quesnel-Vallières1,2,3,4, Robert J Weatheritt5,6, Sabine P Cordes7,8, Benjamin J Blencowe9,10.   

Abstract

Heredity has a major role in autism spectrum disorder (ASD), yet underlying causal genetic variants have been defined only in a fairly small subset of cases. The enormous genetic heterogeneity associated with ASD emphasizes the importance of identifying convergent pathways and molecular mechanisms that are responsible for this disorder. We review how recent transcriptomic analyses have transformed our understanding of pathway convergence in ASD. In particular, deep RNA sequencing coupled with downstream investigations has revealed that a substantial fraction of autistic brains possess distinct transcriptomic signatures. These signatures are in part a consequence of altered neuronal activity and have a particular impact on pre-mRNA alternative splicing patterns.

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Year:  2019        PMID: 30390048     DOI: 10.1038/s41576-018-0066-2

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  142 in total

1.  The familial risk of autism.

Authors:  Sven Sandin; Paul Lichtenstein; Ralf Kuja-Halkola; Henrik Larsson; Christina M Hultman; Abraham Reichenberg
Journal:  JAMA       Date:  2014-05-07       Impact factor: 56.272

2.  Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder.

Authors:  Arjun Krishnan; Ran Zhang; Victoria Yao; Chandra L Theesfeld; Aaron K Wong; Alicja Tadych; Natalia Volfovsky; Alan Packer; Alex Lash; Olga G Troyanskaya
Journal:  Nat Neurosci       Date:  2016-08-01       Impact factor: 24.884

3.  Recurrence of autism spectrum disorders in full- and half-siblings and trends over time: a population-based cohort study.

Authors:  Therese K Grønborg; Diana E Schendel; Erik T Parner
Journal:  JAMA Pediatr       Date:  2013-10       Impact factor: 16.193

4.  Heritability of Autism Spectrum Disorder in a UK Population-Based Twin Sample.

Authors:  Emma Colvert; Beata Tick; Fiona McEwen; Catherine Stewart; Sarah R Curran; Emma Woodhouse; Nicola Gillan; Victoria Hallett; Stephanie Lietz; Tracy Garnett; Angelica Ronald; Robert Plomin; Frühling Rijsdijk; Francesca Happé; Patrick Bolton
Journal:  JAMA Psychiatry       Date:  2015-05       Impact factor: 21.596

5.  Synaptic, transcriptional and chromatin genes disrupted in autism.

Authors:  Silvia De Rubeis; Xin He; Arthur P Goldberg; Christopher S Poultney; Kaitlin Samocha; A Erucment Cicek; Yan Kou; Li Liu; Menachem Fromer; Susan Walker; Tarinder Singh; Lambertus Klei; Jack Kosmicki; Fu Shih-Chen; Branko Aleksic; Monica Biscaldi; Patrick F Bolton; Jessica M Brownfeld; Jinlu Cai; Nicholas G Campbell; Angel Carracedo; Maria H Chahrour; Andreas G Chiocchetti; Hilary Coon; Emily L Crawford; Sarah R Curran; Geraldine Dawson; Eftichia Duketis; Bridget A Fernandez; Louise Gallagher; Evan Geller; Stephen J Guter; R Sean Hill; Juliana Ionita-Laza; Patricia Jimenz Gonzalez; Helena Kilpinen; Sabine M Klauck; Alexander Kolevzon; Irene Lee; Irene Lei; Jing Lei; Terho Lehtimäki; Chiao-Feng Lin; Avi Ma'ayan; Christian R Marshall; Alison L McInnes; Benjamin Neale; Michael J Owen; Noriio Ozaki; Mara Parellada; Jeremy R Parr; Shaun Purcell; Kaija Puura; Deepthi Rajagopalan; Karola Rehnström; Abraham Reichenberg; Aniko Sabo; Michael Sachse; Stephan J Sanders; Chad Schafer; Martin Schulte-Rüther; David Skuse; Christine Stevens; Peter Szatmari; Kristiina Tammimies; Otto Valladares; Annette Voran; Wang Li-San; Lauren A Weiss; A Jeremy Willsey; Timothy W Yu; Ryan K C Yuen; Edwin H Cook; Christine M Freitag; Michael Gill; Christina M Hultman; Thomas Lehner; Aaarno Palotie; Gerard D Schellenberg; Pamela Sklar; Matthew W State; James S Sutcliffe; Christiopher A Walsh; Stephen W Scherer; Michael E Zwick; Jeffrey C Barett; David J Cutler; Kathryn Roeder; Bernie Devlin; Mark J Daly; Joseph D Buxbaum
Journal:  Nature       Date:  2014-10-29       Impact factor: 49.962

6.  Convergence of genes and cellular pathways dysregulated in autism spectrum disorders.

Authors:  Dalila Pinto; Elsa Delaby; Daniele Merico; Mafalda Barbosa; Alison Merikangas; Lambertus Klei; Bhooma Thiruvahindrapuram; Xiao Xu; Robert Ziman; Zhuozhi Wang; Jacob A S Vorstman; Ann Thompson; Regina Regan; Marion Pilorge; Giovanna Pellecchia; Alistair T Pagnamenta; Bárbara Oliveira; Christian R Marshall; Tiago R Magalhaes; Jennifer K Lowe; Jennifer L Howe; Anthony J Griswold; John Gilbert; Eftichia Duketis; Beth A Dombroski; Maretha V De Jonge; Michael Cuccaro; Emily L Crawford; Catarina T Correia; Judith Conroy; Inês C Conceição; Andreas G Chiocchetti; Jillian P Casey; Guiqing Cai; Christelle Cabrol; Nadia Bolshakova; Elena Bacchelli; Richard Anney; Steven Gallinger; Michelle Cotterchio; Graham Casey; Lonnie Zwaigenbaum; Kerstin Wittemeyer; Kirsty Wing; Simon Wallace; Herman van Engeland; Ana Tryfon; Susanne Thomson; Latha Soorya; Bernadette Rogé; Wendy Roberts; Fritz Poustka; Susana Mouga; Nancy Minshew; L Alison McInnes; Susan G McGrew; Catherine Lord; Marion Leboyer; Ann S Le Couteur; Alexander Kolevzon; Patricia Jiménez González; Suma Jacob; Richard Holt; Stephen Guter; Jonathan Green; Andrew Green; Christopher Gillberg; Bridget A Fernandez; Frederico Duque; Richard Delorme; Geraldine Dawson; Pauline Chaste; Cátia Café; Sean Brennan; Thomas Bourgeron; Patrick F Bolton; Sven Bölte; Raphael Bernier; Gillian Baird; Anthony J Bailey; Evdokia Anagnostou; Joana Almeida; Ellen M Wijsman; Veronica J Vieland; Astrid M Vicente; Gerard D Schellenberg; Margaret Pericak-Vance; Andrew D Paterson; Jeremy R Parr; Guiomar Oliveira; John I Nurnberger; Anthony P Monaco; Elena Maestrini; Sabine M Klauck; Hakon Hakonarson; Jonathan L Haines; Daniel H Geschwind; Christine M Freitag; Susan E Folstein; Sean Ennis; Hilary Coon; Agatino Battaglia; Peter Szatmari; James S Sutcliffe; Joachim Hallmayer; Michael Gill; Edwin H Cook; Joseph D Buxbaum; Bernie Devlin; Louise Gallagher; Catalina Betancur; Stephen W Scherer
Journal:  Am J Hum Genet       Date:  2014-04-24       Impact factor: 11.025

7.  Most genetic risk for autism resides with common variation.

Authors:  Trent Gaugler; Lambertus Klei; Stephan J Sanders; Corneliu A Bodea; Arthur P Goldberg; Ann B Lee; Milind Mahajan; Dina Manaa; Yudi Pawitan; Jennifer Reichert; Stephan Ripke; Sven Sandin; Pamela Sklar; Oscar Svantesson; Abraham Reichenberg; Christina M Hultman; Bernie Devlin; Kathryn Roeder; Joseph D Buxbaum
Journal:  Nat Genet       Date:  2014-07-20       Impact factor: 38.330

8.  Pathway Network Analyses for Autism Reveal Multisystem Involvement, Major Overlaps with Other Diseases and Convergence upon MAPK and Calcium Signaling.

Authors:  Ya Wen; Mohamad J Alshikho; Martha R Herbert
Journal:  PLoS One       Date:  2016-04-07       Impact factor: 3.240

Review 9.  Heritability of autism spectrum disorders: a meta-analysis of twin studies.

Authors:  Beata Tick; Patrick Bolton; Francesca Happé; Michael Rutter; Frühling Rijsdijk
Journal:  J Child Psychol Psychiatry       Date:  2015-12-27       Impact factor: 8.982

Review 10.  Syndromic autism spectrum disorders: moving from a clinically defined to a molecularly defined approach.

Authors:  Bridget A Fernandez; Stephen W Scherer
Journal:  Dialogues Clin Neurosci       Date:  2017-12       Impact factor: 5.986

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  42 in total

1.  The Genetic Control of Stoichiometry Underlying Autism.

Authors:  Robert B Darnell
Journal:  Annu Rev Neurosci       Date:  2020-07-08       Impact factor: 12.449

2.  Mechanisms of Neuronal Alternative Splicing and Strategies for Therapeutic Interventions.

Authors:  Eduardo Javier Lopez Soto; Michael J Gandal; Thomas Gonatopoulos-Pournatzis; Elizabeth A Heller; Diou Luo; Sika Zheng
Journal:  J Neurosci       Date:  2019-10-16       Impact factor: 6.167

Review 3.  Brain Organoids as Tools for Modeling Human Neurodevelopmental Disorders.

Authors:  Jason W Adams; Fernanda R Cugola; Alysson R Muotri
Journal:  Physiology (Bethesda)       Date:  2019-09-01

4.  The Exon Junction Complex: A Multitasking Guardian of the Transcriptome.

Authors:  Calvin S Leung; Tracy L Johnson
Journal:  Mol Cell       Date:  2018-12-06       Impact factor: 17.970

Review 5.  From Progenitors to Progeny: Shaping Striatal Circuit Development and Function.

Authors:  Rhys Knowles; Nathalie Dehorter; Tommas Ellender
Journal:  J Neurosci       Date:  2021-11-17       Impact factor: 6.167

Review 6.  Emerging Role of Non-coding RNAs in Autism Spectrum Disorder.

Authors:  Soudeh Ghafouri-Fard; Rezvan Noroozi; Serge Brand; Bashdar Mahmud Hussen; Reyhane Eghtedarian; Mohammad Taheri; Kaveh Ebrahimzadeh
Journal:  J Mol Neurosci       Date:  2021-11-12       Impact factor: 3.444

7.  Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9-Cas12a platform.

Authors:  Thomas Gonatopoulos-Pournatzis; Michael Aregger; Kevin R Brown; Shaghayegh Farhangmehr; Ulrich Braunschweig; Henry N Ward; Kevin C H Ha; Alexander Weiss; Maximilian Billmann; Tanja Durbic; Chad L Myers; Benjamin J Blencowe; Jason Moffat
Journal:  Nat Biotechnol       Date:  2020-03-16       Impact factor: 54.908

Review 8.  Intergenerational Metabolic Syndrome and Neuronal Network Hyperexcitability in Autism.

Authors:  Aileen Rivell; Mark P Mattson
Journal:  Trends Neurosci       Date:  2019-09-05       Impact factor: 13.837

9.  Accelerated evolution of oligodendrocytes in the human brain.

Authors:  Stefano Berto; Isabel Mendizabal; Noriyoshi Usui; Kazuya Toriumi; Paramita Chatterjee; Connor Douglas; Carol A Tamminga; Todd M Preuss; Soojin V Yi; Genevieve Konopka
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-11       Impact factor: 11.205

Review 10.  Overlapping Molecular Pathways Leading to Autism Spectrum Disorders, Fragile X Syndrome, and Targeted Treatments.

Authors:  Maria Jimena Salcedo-Arellano; Ana Maria Cabal-Herrera; Ruchi Harendra Punatar; Courtney Jessica Clark; Christopher Allen Romney; Randi J Hagerman
Journal:  Neurotherapeutics       Date:  2020-11-19       Impact factor: 7.620

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