Literature DB >> 31712436

Accelerated evolution of oligodendrocytes in the human brain.

Stefano Berto1, Isabel Mendizabal2, Noriyoshi Usui1,3,4, Kazuya Toriumi1,5, Paramita Chatterjee2, Connor Douglas1, Carol A Tamminga6, Todd M Preuss7,8,9, Soojin V Yi10, Genevieve Konopka11.   

Abstract

Recent discussions of human brain evolution have largely focused on increased neuron numbers and changes in their connectivity and expression. However, it is increasingly appreciated that oligodendrocytes play important roles in cognitive function and disease. Whether both cell types follow similar or distinctive evolutionary trajectories is not known. We examined the transcriptomes of neurons and oligodendrocytes in the frontal cortex of humans, chimpanzees, and rhesus macaques. We identified human-specific trajectories of gene expression in neurons and oligodendrocytes and show that both cell types exhibit human-specific up-regulation. Moreover, oligodendrocytes have undergone more pronounced accelerated gene expression evolution in the human lineage compared to neurons. We highlighted human-specific coexpression networks with specific functions. Our data suggest that oligodendrocyte human-specific networks are enriched for alternative splicing and transcriptional regulation. Oligodendrocyte networks are also enriched for variants associated with schizophrenia and other neuropsychiatric disorders. Such enrichments were not found in neuronal networks. These results offer a glimpse into the molecular mechanisms of oligodendrocytes during evolution and how such mechanisms are associated with neuropsychiatric disorders.

Entities:  

Keywords:  brain evolution; cell-type expression; comparative primate genomics; neurogenomics

Mesh:

Year:  2019        PMID: 31712436      PMCID: PMC6883816          DOI: 10.1073/pnas.1907982116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  88 in total

1.  The sva package for removing batch effects and other unwanted variation in high-throughput experiments.

Authors:  Jeffrey T Leek; W Evan Johnson; Hilary S Parker; Andrew E Jaffe; John D Storey
Journal:  Bioinformatics       Date:  2012-01-17       Impact factor: 6.937

2.  Evolutionary rate variation in Old World monkeys.

Authors:  Navin Elango; Jeeyoung Lee; Zuogang Peng; Yong-Hwee E Loh; Soojin V Yi
Journal:  Biol Lett       Date:  2009-03-04       Impact factor: 3.703

3.  A Novel Role for Oligodendrocyte Precursor Cells (OPCs) and Sox10 in Mediating Cellular and Behavioral Responses to Heroin.

Authors:  Jennifer A Martin; Aaron Caccamise; Craig T Werner; Rathipriya Viswanathan; Jessie J Polanco; Andrew F Stewart; Shruthi A Thomas; Fraser J Sim; David M Dietz
Journal:  Neuropsychopharmacology       Date:  2017-12-20       Impact factor: 7.853

4.  Human-specific transcriptional networks in the brain.

Authors:  Genevieve Konopka; Tara Friedrich; Jeremy Davis-Turak; Kellen Winden; Michael C Oldham; Fuying Gao; Leslie Chen; Guang-Zhong Wang; Rui Luo; Todd M Preuss; Daniel H Geschwind
Journal:  Neuron       Date:  2012-08-23       Impact factor: 17.173

5.  A Diffusion Tensor Imaging Study Using a Voxel-Based Analysis, Region-of-Interest Method to Analyze White Matter Abnormalities in First-Episode, Treatment-Naïve Major Depressive Disorder.

Authors:  Shruti Srivastava; Manjeet S Bhatia; S K Bhargava; Rima Kumari; Sushil Chandra
Journal:  J Neuropsychiatry Clin Neurosci       Date:  2015-11-09       Impact factor: 2.198

6.  Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.

Authors:  Karol Estrada; Unnur Styrkarsdottir; Evangelos Evangelou; Yi-Hsiang Hsu; Emma L Duncan; Evangelia E Ntzani; Ling Oei; Omar M E Albagha; Najaf Amin; John P Kemp; Daniel L Koller; Guo Li; Ching-Ti Liu; Ryan L Minster; Alireza Moayyeri; Liesbeth Vandenput; Dana Willner; Su-Mei Xiao; Laura M Yerges-Armstrong; Hou-Feng Zheng; Nerea Alonso; Joel Eriksson; Candace M Kammerer; Stephen K Kaptoge; Paul J Leo; Gudmar Thorleifsson; Scott G Wilson; James F Wilson; Ville Aalto; Markku Alen; Aaron K Aragaki; Thor Aspelund; Jacqueline R Center; Zoe Dailiana; David J Duggan; Melissa Garcia; Natàlia Garcia-Giralt; Sylvie Giroux; Göran Hallmans; Lynne J Hocking; Lise Bjerre Husted; Karen A Jameson; Rita Khusainova; Ghi Su Kim; Charles Kooperberg; Theodora Koromila; Marcin Kruk; Marika Laaksonen; Andrea Z Lacroix; Seung Hun Lee; Ping C Leung; Joshua R Lewis; Laura Masi; Simona Mencej-Bedrac; Tuan V Nguyen; Xavier Nogues; Millan S Patel; Janez Prezelj; Lynda M Rose; Serena Scollen; Kristin Siggeirsdottir; Albert V Smith; Olle Svensson; Stella Trompet; Olivia Trummer; Natasja M van Schoor; Jean Woo; Kun Zhu; Susana Balcells; Maria Luisa Brandi; Brendan M Buckley; Sulin Cheng; Claus Christiansen; Cyrus Cooper; George Dedoussis; Ian Ford; Morten Frost; David Goltzman; Jesús González-Macías; Mika Kähönen; Magnus Karlsson; Elza Khusnutdinova; Jung-Min Koh; Panagoula Kollia; Bente Lomholt Langdahl; William D Leslie; Paul Lips; Östen Ljunggren; Roman S Lorenc; Janja Marc; Dan Mellström; Barbara Obermayer-Pietsch; José M Olmos; Ulrika Pettersson-Kymmer; David M Reid; José A Riancho; Paul M Ridker; François Rousseau; P Eline Slagboom; Nelson L S Tang; Roser Urreizti; Wim Van Hul; Jorma Viikari; María T Zarrabeitia; Yurii S Aulchenko; Martha Castano-Betancourt; Elin Grundberg; Lizbeth Herrera; Thorvaldur Ingvarsson; Hrefna Johannsdottir; Tony Kwan; Rui Li; Robert Luben; Carolina Medina-Gómez; Stefan Th Palsson; Sjur Reppe; Jerome I Rotter; Gunnar Sigurdsson; Joyce B J van Meurs; Dominique Verlaan; Frances M K Williams; Andrew R Wood; Yanhua Zhou; Kaare M Gautvik; Tomi Pastinen; Soumya Raychaudhuri; Jane A Cauley; Daniel I Chasman; Graeme R Clark; Steven R Cummings; Patrick Danoy; Elaine M Dennison; Richard Eastell; John A Eisman; Vilmundur Gudnason; Albert Hofman; Rebecca D Jackson; Graeme Jones; J Wouter Jukema; Kay-Tee Khaw; Terho Lehtimäki; Yongmei Liu; Mattias Lorentzon; Eugene McCloskey; Braxton D Mitchell; Kannabiran Nandakumar; Geoffrey C Nicholson; Ben A Oostra; Munro Peacock; Huibert A P Pols; Richard L Prince; Olli Raitakari; Ian R Reid; John Robbins; Philip N Sambrook; Pak Chung Sham; Alan R Shuldiner; Frances A Tylavsky; Cornelia M van Duijn; Nick J Wareham; L Adrienne Cupples; Michael J Econs; David M Evans; Tamara B Harris; Annie Wai Chee Kung; Bruce M Psaty; Jonathan Reeve; Timothy D Spector; Elizabeth A Streeten; M Carola Zillikens; Unnur Thorsteinsdottir; Claes Ohlsson; David Karasik; J Brent Richards; Matthew A Brown; Kari Stefansson; André G Uitterlinden; Stuart H Ralston; John P A Ioannidis; Douglas P Kiel; Fernando Rivadeneira
Journal:  Nat Genet       Date:  2012-04-15       Impact factor: 38.330

7.  MAGMA: generalized gene-set analysis of GWAS data.

Authors:  Christiaan A de Leeuw; Joris M Mooij; Tom Heskes; Danielle Posthuma
Journal:  PLoS Comput Biol       Date:  2015-04-17       Impact factor: 4.475

8.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

9.  Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type.

Authors:  Eszter Boldog; Trygve E Bakken; Rebecca D Hodge; Mark Novotny; Brian D Aevermann; Judith Baka; Sándor Bordé; Jennie L Close; Francisco Diez-Fuertes; Song-Lin Ding; Nóra Faragó; Ágnes K Kocsis; Balázs Kovács; Zoe Maltzer; Jamison M McCorrison; Jeremy A Miller; Gábor Molnár; Gáspár Oláh; Attila Ozsvár; Márton Rózsa; Soraya I Shehata; Kimberly A Smith; Susan M Sunkin; Danny N Tran; Pratap Venepally; Abby Wall; László G Puskás; Pál Barzó; Frank J Steemers; Nicholas J Schork; Richard H Scheuermann; Roger S Lasken; Ed S Lein; Gábor Tamás
Journal:  Nat Neurosci       Date:  2018-08-27       Impact factor: 24.884

10.  Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.

Authors:  Andrew P Morris; Benjamin F Voight; Tanya M Teslovich; Teresa Ferreira; Ayellet V Segrè; Valgerdur Steinthorsdottir; Rona J Strawbridge; Hassan Khan; Harald Grallert; Anubha Mahajan; Inga Prokopenko; Hyun Min Kang; Christian Dina; Tonu Esko; Ross M Fraser; Stavroula Kanoni; Ashish Kumar; Vasiliki Lagou; Claudia Langenberg; Jian'an Luan; Cecilia M Lindgren; Martina Müller-Nurasyid; Sonali Pechlivanis; N William Rayner; Laura J Scott; Steven Wiltshire; Loic Yengo; Leena Kinnunen; Elizabeth J Rossin; Soumya Raychaudhuri; Andrew D Johnson; Antigone S Dimas; Ruth J F Loos; Sailaja Vedantam; Han Chen; Jose C Florez; Caroline Fox; Ching-Ti Liu; Denis Rybin; David J Couper; Wen Hong L Kao; Man Li; Marilyn C Cornelis; Peter Kraft; Qi Sun; Rob M van Dam; Heather M Stringham; Peter S Chines; Krista Fischer; Pierre Fontanillas; Oddgeir L Holmen; Sarah E Hunt; Anne U Jackson; Augustine Kong; Robert Lawrence; Julia Meyer; John R B Perry; Carl G P Platou; Simon Potter; Emil Rehnberg; Neil Robertson; Suthesh Sivapalaratnam; Alena Stančáková; Kathleen Stirrups; Gudmar Thorleifsson; Emmi Tikkanen; Andrew R Wood; Peter Almgren; Mustafa Atalay; Rafn Benediktsson; Lori L Bonnycastle; Noël Burtt; Jason Carey; Guillaume Charpentier; Andrew T Crenshaw; Alex S F Doney; Mozhgan Dorkhan; Sarah Edkins; Valur Emilsson; Elodie Eury; Tom Forsen; Karl Gertow; Bruna Gigante; George B Grant; Christopher J Groves; Candace Guiducci; Christian Herder; Astradur B Hreidarsson; Jennie Hui; Alan James; Anna Jonsson; Wolfgang Rathmann; Norman Klopp; Jasmina Kravic; Kaarel Krjutškov; Cordelia Langford; Karin Leander; Eero Lindholm; Stéphane Lobbens; Satu Männistö; Ghazala Mirza; Thomas W Mühleisen; Bill Musk; Melissa Parkin; Loukianos Rallidis; Jouko Saramies; Bengt Sennblad; Sonia Shah; Gunnar Sigurðsson; Angela Silveira; Gerald Steinbach; Barbara Thorand; Joseph Trakalo; Fabrizio Veglia; Roman Wennauer; Wendy Winckler; Delilah Zabaneh; Harry Campbell; Cornelia van Duijn; Andre G Uitterlinden; Albert Hofman; Eric Sijbrands; Goncalo R Abecasis; Katharine R Owen; Eleftheria Zeggini; Mieke D Trip; Nita G Forouhi; Ann-Christine Syvänen; Johan G Eriksson; Leena Peltonen; Markus M Nöthen; Beverley Balkau; Colin N A Palmer; Valeriya Lyssenko; Tiinamaija Tuomi; Bo Isomaa; David J Hunter; Lu Qi; Alan R Shuldiner; Michael Roden; Ines Barroso; Tom Wilsgaard; John Beilby; Kees Hovingh; Jackie F Price; James F Wilson; Rainer Rauramaa; Timo A Lakka; Lars Lind; George Dedoussis; Inger Njølstad; Nancy L Pedersen; Kay-Tee Khaw; Nicholas J Wareham; Sirkka M Keinanen-Kiukaanniemi; Timo E Saaristo; Eeva Korpi-Hyövälti; Juha Saltevo; Markku Laakso; Johanna Kuusisto; Andres Metspalu; Francis S Collins; Karen L Mohlke; Richard N Bergman; Jaakko Tuomilehto; Bernhard O Boehm; Christian Gieger; Kristian Hveem; Stephane Cauchi; Philippe Froguel; Damiano Baldassarre; Elena Tremoli; Steve E Humphries; Danish Saleheen; John Danesh; Erik Ingelsson; Samuli Ripatti; Veikko Salomaa; Raimund Erbel; Karl-Heinz Jöckel; Susanne Moebus; Annette Peters; Thomas Illig; Ulf de Faire; Anders Hamsten; Andrew D Morris; Peter J Donnelly; Timothy M Frayling; Andrew T Hattersley; Eric Boerwinkle; Olle Melander; Sekar Kathiresan; Peter M Nilsson; Panos Deloukas; Unnur Thorsteinsdottir; Leif C Groop; Kari Stefansson; Frank Hu; James S Pankow; Josée Dupuis; James B Meigs; David Altshuler; Michael Boehnke; Mark I McCarthy
Journal:  Nat Genet       Date:  2012-08-12       Impact factor: 38.330

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  17 in total

Review 1.  Glial evolution as a determinant of human behavior and its disorders.

Authors:  Steven A Goldman
Journal:  Ann N Y Acad Sci       Date:  2020-05-25       Impact factor: 5.691

2.  Genomics at cellular resolution: insights into cognitive disorders and their evolution.

Authors:  Stefano Berto; Yuxiang Liu; Genevieve Konopka
Journal:  Hum Mol Genet       Date:  2020-09-30       Impact factor: 6.150

3.  An integrative understanding of comparative cognition: lessons from human brain evolution.

Authors:  Yuxiang Liu; Genevieve Konopka
Journal:  Integr Comp Biol       Date:  2020-10-01       Impact factor: 3.326

Review 4.  Evolution of cortical neurons supporting human cognition.

Authors:  A A Galakhova; S Hunt; R Wilbers; D B Heyer; C P J de Kock; H D Mansvelder; N A Goriounova
Journal:  Trends Cogn Sci       Date:  2022-09-15       Impact factor: 24.482

5.  In-vivo diffusion MRI protocol optimization for the chimpanzee brain and examination of aging effects on the primate optic nerve at 3T.

Authors:  Xiaodong Zhang; Chun-Xia Li; Yumei Yan; Govind Nair; James K Rilling; James G Herndon; Todd M Preuss; Xiaoping Hu; Longchuan Li
Journal:  Magn Reson Imaging       Date:  2020-12-23       Impact factor: 2.546

Review 6.  Evolution of the Human Brain Can Help Determine Pathophysiology of Neurodevelopmental Disorders.

Authors:  Koichiro Irie; Miyuki Doi; Noriyoshi Usui; Shoichi Shimada
Journal:  Front Neurosci       Date:  2022-04-01       Impact factor: 5.152

7.  Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains.

Authors:  Ekaterina Khrameeva; Ilia Kurochkin; Dingding Han; Patricia Guijarro; Sabina Kanton; Malgorzata Santel; Zhengzong Qian; Shen Rong; Pavel Mazin; Marat Sabirov; Matvei Bulat; Olga Efimova; Anna Tkachev; Song Guo; Chet C Sherwood; J Gray Camp; Svante Pääbo; Barbara Treutlein; Philipp Khaitovich
Journal:  Genome Res       Date:  2020-05-18       Impact factor: 9.043

Review 8.  Evolution of prefrontal cortex.

Authors:  Todd M Preuss; Steven P Wise
Journal:  Neuropsychopharmacology       Date:  2021-08-06       Impact factor: 7.853

9.  Significant Evolutionary Constraints on Neuron Cells Revealed by Single-Cell Transcriptomics.

Authors:  Ganlu Hu; Jie Li; Guang-Zhong Wang
Journal:  Genome Biol Evol       Date:  2020-04-01       Impact factor: 3.416

10.  Evolution of regulatory signatures in primate cortical neurons at cell-type resolution.

Authors:  Alexey Kozlenkov; Marit W Vermunt; Pasha Apontes; Junhao Li; Ke Hao; Chet C Sherwood; Patrick R Hof; John J Ely; Michael Wegner; Eran A Mukamel; Menno P Creyghton; Eugene V Koonin; Stella Dracheva
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-27       Impact factor: 11.205

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