Literature DB >> 33631802

deepEA: a containerized web server for interactive analysis of epitranscriptome sequencing data.

Jingjing Zhai1,2, Jie Song1,2, Ting Zhang1,2, Shang Xie2, Chuang Ma1,2.   

Abstract

Year:  2021        PMID: 33631802      PMCID: PMC8133649          DOI: 10.1093/plphys/kiaa008

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


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  16 in total

1.  PEA: an integrated R toolkit for plant epitranscriptome analysis.

Authors:  Jingjing Zhai; Jie Song; Qian Cheng; Yunjia Tang; Chuang Ma
Journal:  Bioinformatics       Date:  2018-11-01       Impact factor: 6.937

Review 2.  Messenger RNA Modifications in Plants.

Authors:  Lisha Shen; Zhe Liang; Chui Eng Wong; Hao Yu
Journal:  Trends Plant Sci       Date:  2019-02-08       Impact factor: 18.313

Review 3.  Chemical Modifications in the Life of an mRNA Transcript.

Authors:  Sigrid Nachtergaele; Chuan He
Journal:  Annu Rev Genet       Date:  2018-09-19       Impact factor: 16.830

Review 4.  Dynamic RNA Modifications in Gene Expression Regulation.

Authors:  Ian A Roundtree; Molly E Evans; Tao Pan; Chuan He
Journal:  Cell       Date:  2017-06-15       Impact factor: 41.582

5.  HISAT: a fast spliced aligner with low memory requirements.

Authors:  Daehwan Kim; Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2015-03-09       Impact factor: 28.547

6.  SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features.

Authors:  Yuan Zhou; Pan Zeng; Yan-Hui Li; Ziding Zhang; Qinghua Cui
Journal:  Nucleic Acids Res       Date:  2016-02-20       Impact factor: 16.971

Review 7.  Messenger RNA modifications: Form, distribution, and function.

Authors:  Wendy V Gilbert; Tristan A Bell; Cassandra Schaening
Journal:  Science       Date:  2016-06-17       Impact factor: 47.728

Review 8.  RNA modifications modulate gene expression during development.

Authors:  Michaela Frye; Bryan T Harada; Mikaela Behm; Chuan He
Journal:  Science       Date:  2018-09-28       Impact factor: 47.728

Review 9.  RNA modifications: what have we learned and where are we headed?

Authors:  Michaela Frye; Samie R Jaffrey; Tao Pan; Gideon Rechavi; Tsutomu Suzuki
Journal:  Nat Rev Genet       Date:  2016-05-03       Impact factor: 53.242

10.  RNAmod: an integrated system for the annotation of mRNA modifications.

Authors:  Qi Liu; Richard I Gregory
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

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  2 in total

Review 1.  Dynamics of m6A RNA Methylome on the Hallmarks of Hepatocellular Carcinoma.

Authors:  Enakshi Sivasudhan; Neil Blake; Zhi-Liang Lu; Jia Meng; Rong Rong
Journal:  Front Cell Dev Biol       Date:  2021-04-01

2.  M6A-BiNP: predicting N6-methyladenosine sites based on bidirectional position-specific propensities of polynucleotides and pointwise joint mutual information.

Authors:  Mingzhao Wang; Juanying Xie; Shengquan Xu
Journal:  RNA Biol       Date:  2021-06-23       Impact factor: 4.652

  2 in total

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