Literature DB >> 18378185

tRNA's modifications bring order to gene expression.

Estella M Gustilo1, Franck Ap Vendeix, Paul F Agris.   

Abstract

The posttranscriptional modification of RNA is a significant investment in genes, enzymes, substrates, and energy. Advances in molecular genetics and structural biology indicate strongly that modifications of tRNA's anticodon domain control gene expression. Modifications at the anticodon's wobble position are required for recognition of rarely used codons and restrict or expand codon recognition depending on their chemistries. A shift of the translational reading frame occurs in the absence of modifications at either wobble position-34 or the conserved purine-37, 3'-adjacent to the anticodon, causing expression of alternate protein sequences. These modifications have in common their contribution of order to tRNA's anticodon.

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Year:  2008        PMID: 18378185      PMCID: PMC2408636          DOI: 10.1016/j.mib.2008.02.003

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  49 in total

1.  Translational misreading: a tRNA modification counteracts a +2 ribosomal frameshift.

Authors:  D Brégeon; V Colot; M Radman; F Taddei
Journal:  Genes Dev       Date:  2001-09-01       Impact factor: 11.361

Review 2.  Differential codon usage: a safeguard against inappropriate expression of specialized genes?

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Journal:  FEBS Lett       Date:  1995-03-27       Impact factor: 4.124

Review 3.  Genetic dissection of synthesis and function of modified nucleosides in bacterial transfer RNA.

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Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1995

Review 4.  Universal rules and idiosyncratic features in tRNA identity.

Authors:  R Giegé; M Sissler; C Florentz
Journal:  Nucleic Acids Res       Date:  1998-11-15       Impact factor: 16.971

5.  The RNA Modification Database: 1999 update.

Authors:  J Rozenski; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

6.  A new model for phenotypic suppression of frameshift mutations by mutant tRNAs.

Authors:  Q Qian; J N Li; H Zhao; T G Hagervall; P J Farabaugh; G R Björk
Journal:  Mol Cell       Date:  1998-03       Impact factor: 17.970

Review 7.  Programmed translational frameshifting.

Authors:  P J Farabaugh
Journal:  Annu Rev Genet       Date:  1996       Impact factor: 16.830

8.  Structural requirements for the formation of 1-methylguanosine in vivo in tRNA(Pro)GGG of Salmonella typhimurium.

Authors:  Q Qian; G R Björk
Journal:  J Mol Biol       Date:  1997-02-21       Impact factor: 5.469

9.  Effects of a minor isoleucyl tRNA on heterologous protein translation in Escherichia coli.

Authors:  B J Del Tito; J M Ward; J Hodgson; C J Gershater; H Edwards; L A Wysocki; F A Watson; G Sathe; J F Kane
Journal:  J Bacteriol       Date:  1995-12       Impact factor: 3.490

10.  Seven, eight and nine-membered anticodon loop mutants of tRNA(2Arg) which cause +1 frameshifting. Tolerance of DHU arm and other secondary mutations.

Authors:  T M Tuohy; S Thompson; R F Gesteland; J F Atkins
Journal:  J Mol Biol       Date:  1992-12-20       Impact factor: 5.469

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  125 in total

1.  Structural aspects of messenger RNA reading frame maintenance by the ribosome.

Authors:  Lasse B Jenner; Natalia Demeshkina; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2010-04-18       Impact factor: 15.369

2.  Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs.

Authors:  Mridusmita Saikia; Ye Fu; Mariana Pavon-Eternod; Chuan He; Tao Pan
Journal:  RNA       Date:  2010-05-19       Impact factor: 4.942

3.  Stabilization of G domain conformations in the tRNA-modifying MnmE-GidA complex observed with double electron electron resonance spectroscopy.

Authors:  Sabine Böhme; Simon Meyer; André Krüger; Heinz-Jürgen Steinhoff; Alfred Wittinghofer; Johann P Klare
Journal:  J Biol Chem       Date:  2010-03-30       Impact factor: 5.157

4.  AtTrm5a catalyses 1-methylguanosine and 1-methylinosine formation on tRNAs and is important for vegetative and reproductive growth in Arabidopsis thaliana.

Authors:  Xiaohuan Jin; Zhengyi Lv; Junbao Gao; Rui Zhang; Ting Zheng; Ping Yin; Dongqin Li; Liangcai Peng; Xintao Cao; Yan Qin; Staffan Persson; Bo Zheng; Peng Chen
Journal:  Nucleic Acids Res       Date:  2019-01-25       Impact factor: 16.971

5.  Crystal structure and RNA binding properties of the RNA recognition motif (RRM) and AlkB domains in human AlkB homolog 8 (ABH8), an enzyme catalyzing tRNA hypermodification.

Authors:  Chiara Pastore; Irini Topalidou; Farhad Forouhar; Amy C Yan; Matthew Levy; John F Hunt
Journal:  J Biol Chem       Date:  2011-11-07       Impact factor: 5.157

6.  The MiaA tRNA modification enzyme is necessary for robust RpoS expression in Escherichia coli.

Authors:  Karl M Thompson; Susan Gottesman
Journal:  J Bacteriol       Date:  2013-12-02       Impact factor: 3.490

Review 7.  Role of tRNAs in Breast Cancer Regulation.

Authors:  Nam Hoon Kwon; Jin Young Lee; Sunghoon Kim
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

8.  The RNA degradosome promotes tRNA quality control through clearance of hypomodified tRNA.

Authors:  Satoshi Kimura; Matthew K Waldor
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-08       Impact factor: 11.205

9.  Coadaptation of isoacceptor tRNA genes and codon usage bias for translation efficiency in Aedes aegypti and Anopheles gambiae.

Authors:  S K Behura; D W Severson
Journal:  Insect Mol Biol       Date:  2010-10-29       Impact factor: 3.585

Review 10.  Pathways to disease from natural variations in human cytoplasmic tRNAs.

Authors:  Jeremy T Lant; Matthew D Berg; Ilka U Heinemann; Christopher J Brandl; Patrick O'Donoghue
Journal:  J Biol Chem       Date:  2019-01-14       Impact factor: 5.157

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