Literature DB >> 30122475

Neutralizing Gatad2a-Chd4-Mbd3/NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency.

Nofar Mor1, Yoach Rais2, Daoud Sheban3, Shani Peles1, Alejandro Aguilera-Castrejon1, Asaf Zviran4, Dalia Elinger5, Sergey Viukov1, Shay Geula1, Vladislav Krupalnik1, Mirie Zerbib1, Elad Chomsky6, Lior Lasman1, Tom Shani1, Jonathan Bayerl1, Ohad Gafni1, Suhair Hanna7, Jason D Buenrostro8, Tzachi Hagai9, Hagit Masika10, Gintautas Vainorius11, Yehudit Bergman10, William J Greenleaf12, Miguel A Esteban13, Ulrich Elling11, Yishai Levin5, Rada Massarwa1, Yifat Merbl14, Noa Novershtern15, Jacob H Hanna16.   

Abstract

Mbd3, a member of nucleosome remodeling and deacetylase (NuRD) co-repressor complex, was previously identified as an inhibitor for deterministic induced pluripotent stem cell (iPSC) reprogramming, where up to 100% of donor cells successfully complete the process. NuRD can assume multiple mutually exclusive conformations, and it remains unclear whether this deterministic phenotype can be attributed to a specific Mbd3/NuRD subcomplex. Moreover, since complete ablation of Mbd3 blocks somatic cell proliferation, we aimed to explore functionally relevant alternative ways to neutralize Mbd3-dependent NuRD activity. We identify Gatad2a, a NuRD-specific subunit, whose complete deletion specifically disrupts Mbd3/NuRD repressive activity on the pluripotency circuitry during iPSC differentiation and reprogramming without ablating somatic cell proliferation. Inhibition of Gatad2a facilitates deterministic murine iPSC reprogramming within 8 days. We validate a distinct molecular axis, Gatad2a-Chd4-Mbd3, within Mbd3/NuRD as being critical for blocking reestablishment of naive pluripotency and further highlight signaling-dependent and post-translational modifications of Mbd3/NuRD that influence its interactions and assembly.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CHD4; Gatad2a; Mbd3; NuRD; P66α; epigenetics; iPSCs; pluripotency; reprogramming

Mesh:

Substances:

Year:  2018        PMID: 30122475      PMCID: PMC7116536          DOI: 10.1016/j.stem.2018.07.004

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  33 in total

Review 1.  Molecular features of cellular reprogramming and development.

Authors:  Zachary D Smith; Camille Sindhu; Alexander Meissner
Journal:  Nat Rev Mol Cell Biol       Date:  2016-02-17       Impact factor: 94.444

2.  SUMO modification enhances p66-mediated transcriptional repression of the Mi-2/NuRD complex.

Authors:  Zihua Gong; Marc Brackertz; Rainer Renkawitz
Journal:  Mol Cell Biol       Date:  2006-06       Impact factor: 4.272

3.  p66Alpha-MBD2 coiled-coil interaction and recruitment of Mi-2 are critical for globin gene silencing by the MBD2-NuRD complex.

Authors:  Merlin Nithya Gnanapragasam; J Neel Scarsdale; Maria L Amaya; Heather D Webb; Megha A Desai; Ninad M Walavalkar; Shou Zhen Wang; Sheng Zu Zhu; Gordon D Ginder; David C Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-13       Impact factor: 11.205

4.  Derivation of novel human ground state naive pluripotent stem cells.

Authors:  Ohad Gafni; Leehee Weinberger; Abed AlFatah Mansour; Yair S Manor; Elad Chomsky; Dalit Ben-Yosef; Yael Kalma; Sergey Viukov; Itay Maza; Asaf Zviran; Yoach Rais; Zohar Shipony; Zohar Mukamel; Vladislav Krupalnik; Mirie Zerbib; Shay Geula; Inbal Caspi; Dan Schneir; Tamar Shwartz; Shlomit Gilad; Daniela Amann-Zalcenstein; Sima Benjamin; Ido Amit; Amos Tanay; Rada Massarwa; Noa Novershtern; Jacob H Hanna
Journal:  Nature       Date:  2013-10-30       Impact factor: 49.962

5.  Dual inhibition of Src and GSK3 maintains mouse embryonic stem cells, whose differentiation is mechanically regulated by Src signaling.

Authors:  Takeshi Shimizu; Jun Ueda; Jolene Caifeng Ho; Katsuhiko Iwasaki; Lorenz Poellinger; Ichiro Harada; Yasuhiro Sawada
Journal:  Stem Cells       Date:  2012-07       Impact factor: 6.277

6.  Deterministic direct reprogramming of somatic cells to pluripotency.

Authors:  Yoach Rais; Asaf Zviran; Shay Geula; Ohad Gafni; Elad Chomsky; Sergey Viukov; Abed AlFatah Mansour; Inbal Caspi; Vladislav Krupalnik; Mirie Zerbib; Itay Maza; Nofar Mor; Dror Baran; Leehee Weinberger; Diego A Jaitin; David Lara-Astiaso; Ronnie Blecher-Gonen; Zohar Shipony; Zohar Mukamel; Tzachi Hagai; Shlomit Gilad; Daniela Amann-Zalcenstein; Amos Tanay; Ido Amit; Noa Novershtern; Jacob H Hanna
Journal:  Nature       Date:  2013-09-18       Impact factor: 49.962

7.  Characterization of Two Distinct Nucleosome Remodeling and Deacetylase (NuRD) Complex Assemblies in Embryonic Stem Cells.

Authors:  Daniel Bode; Lu Yu; Peri Tate; Mercedes Pardo; Jyoti Choudhary
Journal:  Mol Cell Proteomics       Date:  2015-12-29       Impact factor: 5.911

8.  A Functional Switch of NuRD Chromatin Remodeling Complex Subunits Regulates Mouse Cortical Development.

Authors:  Justyna Nitarska; Jacob G Smith; William T Sherlock; Michele M G Hillege; Alexi Nott; William D Barshop; Ajay A Vashisht; James A Wohlschlegel; Richard Mitter; Antonella Riccio
Journal:  Cell Rep       Date:  2016-11-01       Impact factor: 9.423

9.  High-resolution analysis with novel cell-surface markers identifies routes to iPS cells.

Authors:  James O'Malley; Stavroula Skylaki; Kumiko A Iwabuchi; Eleni Chantzoura; Tyson Ruetz; Anna Johnsson; Simon R Tomlinson; Sten Linnarsson; Keisuke Kaji
Journal:  Nature       Date:  2013-06-02       Impact factor: 49.962

10.  The histone chaperone CAF-1 safeguards somatic cell identity.

Authors:  Sihem Cheloufi; Ulrich Elling; Barbara Hopfgartner; Youngsook L Jung; Jernej Murn; Maria Ninova; Maria Hubmann; Aimee I Badeaux; Cheen Euong Ang; Danielle Tenen; Daniel J Wesche; Nadezhda Abazova; Max Hogue; Nilgun Tasdemir; Justin Brumbaugh; Philipp Rathert; Julian Jude; Francesco Ferrari; Andres Blanco; Michaela Fellner; Daniel Wenzel; Marietta Zinner; Simon E Vidal; Oliver Bell; Matthias Stadtfeld; Howard Y Chang; Genevieve Almouzni; Scott W Lowe; John Rinn; Marius Wernig; Alexei Aravin; Yang Shi; Peter J Park; Josef M Penninger; Johannes Zuber; Konrad Hochedlinger
Journal:  Nature       Date:  2015-12-10       Impact factor: 49.962

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  16 in total

1.  Deterministic Somatic Cell Reprogramming Involves Continuous Transcriptional Changes Governed by Myc and Epigenetic-Driven Modules.

Authors:  Asaf Zviran; Nofar Mor; Yoach Rais; Hila Gingold; Shani Peles; Elad Chomsky; Sergey Viukov; Jason D Buenrostro; Roberta Scognamiglio; Leehee Weinberger; Yair S Manor; Vladislav Krupalnik; Mirie Zerbib; Hadas Hezroni; Diego Adhemar Jaitin; David Larastiaso; Shlomit Gilad; Sima Benjamin; Ohad Gafni; Awni Mousa; Muneef Ayyash; Daoud Sheban; Jonathan Bayerl; Alejandro Aguilera-Castrejon; Rada Massarwa; Itay Maza; Suhair Hanna; Yonatan Stelzer; Igor Ulitsky; William J Greenleaf; Amos Tanay; Andreas Trumpp; Ido Amit; Yitzhak Pilpel; Noa Novershtern; Jacob H Hanna
Journal:  Cell Stem Cell       Date:  2018-12-13       Impact factor: 24.633

Review 2.  Reprogramming: identifying the mechanisms that safeguard cell identity.

Authors:  Justin Brumbaugh; Bruno Di Stefano; Konrad Hochedlinger
Journal:  Development       Date:  2019-12-02       Impact factor: 6.868

3.  Novel Roles for SUMOylation in Cellular Plasticity.

Authors:  Bruno Di Stefano; Konrad Hochedlinger
Journal:  Trends Cell Biol       Date:  2018-10-26       Impact factor: 20.808

Review 4.  Epigenetics as "conductor" in "orchestra" of pluripotent states.

Authors:  Ishita Baral; Pallavi Chinnu Varghese; Debasree Dutta
Journal:  Cell Tissue Res       Date:  2022-07-15       Impact factor: 4.051

5.  MAP2K6 remodels chromatin and facilitates reprogramming by activating Gatad2b-phosphorylation dependent heterochromatin loosening.

Authors:  Guangsuo Xing; Zichao Liu; Luyuan Huang; Danyun Zhao; Tao Wang; Hao Yuan; Yi Wu; Linpeng Li; Qi Long; Yanshuang Zhou; Zhihong Hao; Yang Liu; Jianghuan Lu; Shiting Li; Jieying Zhu; Bo Wang; Junwei Wang; Jing Liu; Jiekai Chen; Duanqing Pei; Xingguo Liu; Keshi Chen
Journal:  Cell Death Differ       Date:  2021-11-24       Impact factor: 12.067

6.  Smarca5-mediated epigenetic programming facilitates fetal HSPC development in vertebrates.

Authors:  Yanyan Ding; Wen Wang; Dongyuan Ma; Guixian Liang; Zhixin Kang; Yuanyuan Xue; Yifan Zhang; Lu Wang; Jian Heng; Yong Zhang; Feng Liu
Journal:  Blood       Date:  2021-01-14       Impact factor: 22.113

Review 7.  The Methyl-CpG-Binding Domain 2 and 3 Proteins and Formation of the Nucleosome Remodeling and Deacetylase Complex.

Authors:  Gage Leighton; David C Williams
Journal:  J Mol Biol       Date:  2019-10-15       Impact factor: 5.469

8.  Long noncoding RNAs sustain high expression levels of exogenous octamer-binding protein 4 by sponging regulatory microRNAs during cellular reprogramming.

Authors:  Xiaolei Zhang; Jiaming Zhang; Kailun Zheng; Heng Zhang; Xixiang Pei; Zhi Yin; Duancheng Wen; Qingran Kong
Journal:  J Biol Chem       Date:  2019-10-17       Impact factor: 5.157

9.  ALKBH5 regulates somatic cell reprogramming in a phase-specific manner.

Authors:  Sherif Khodeer; Arne Klungland; John Arne Dahl
Journal:  J Cell Sci       Date:  2022-06-10       Impact factor: 5.235

10.  NuRD-interacting protein ZFP296 regulates genome-wide NuRD localization and differentiation of mouse embryonic stem cells.

Authors:  Susan L Kloet; Ino D Karemaker; Lisa van Voorthuijsen; Rik G H Lindeboom; Marijke P Baltissen; Raghu R Edupuganti; Deepani W Poramba-Liyanage; Pascal W T C Jansen; Michiel Vermeulen
Journal:  Nat Commun       Date:  2018-11-02       Impact factor: 14.919

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