Literature DB >> 31792064

Reprogramming: identifying the mechanisms that safeguard cell identity.

Justin Brumbaugh1, Bruno Di Stefano2,3,4,5,6, Konrad Hochedlinger7,3,4,5,6.   

Abstract

Development and homeostasis rely upon concerted regulatory pathways to establish the specialized cell types needed for tissue function. Once a cell type is specified, the processes that restrict and maintain cell fate are equally important in ensuring tissue integrity. Over the past decade, several approaches to experimentally reprogram cell fate have emerged. Importantly, efforts to improve and understand these approaches have uncovered novel molecular determinants that reinforce lineage commitment and help resist cell fate changes. In this Review, we summarize recent studies that have provided insights into the various chromatin factors, post-transcriptional processes and features of genomic organization that safeguard cell identity in the context of reprogramming to pluripotency. We also highlight how these factors function in other experimental, physiological and pathological cell fate transitions, including direct lineage conversion, pluripotency-to-totipotency reversion and cancer.
© 2019. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Cell identity; Reprogramming; Safeguarding

Year:  2019        PMID: 31792064      PMCID: PMC6918747          DOI: 10.1242/dev.182170

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  238 in total

1.  Global splicing pattern reversion during somatic cell reprogramming.

Authors:  Sho Ohta; Eisuke Nishida; Shinya Yamanaka; Takuya Yamamoto
Journal:  Cell Rep       Date:  2013-10-17       Impact factor: 9.423

2.  Cell type-specific expression of LINE-1 open reading frames 1 and 2 in fetal and adult human tissues.

Authors:  Süleyman Ergün; Christian Buschmann; Jochen Heukeshoven; Kristin Dammann; Frank Schnieders; Heidrun Lauke; Fariba Chalajour; Nerbil Kilic; Wolf H Strätling; Gerald G Schumann
Journal:  J Biol Chem       Date:  2004-03-31       Impact factor: 5.157

3.  Tet2 facilitates the derepression of myeloid target genes during CEBPα-induced transdifferentiation of pre-B cells.

Authors:  Eric M Kallin; Javier Rodríguez-Ubreva; Jesper Christensen; Luisa Cimmino; Iannis Aifantis; Kristian Helin; Esteban Ballestar; Thomas Graf
Journal:  Mol Cell       Date:  2012-09-13       Impact factor: 17.970

4.  Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase.

Authors:  Yosef Buganim; Dina A Faddah; Albert W Cheng; Elena Itskovich; Styliani Markoulaki; Kibibi Ganz; Sandy L Klemm; Alexander van Oudenaarden; Rudolf Jaenisch
Journal:  Cell       Date:  2012-09-14       Impact factor: 41.582

5.  Bmi1 Is a Key Epigenetic Barrier to Direct Cardiac Reprogramming.

Authors:  Yang Zhou; Li Wang; Haley Ruth Vaseghi; Ziqing Liu; Rui Lu; Sahar Alimohamadi; Chaoying Yin; Ji-Dong Fu; Greg G Wang; Jiandong Liu; Li Qian
Journal:  Cell Stem Cell       Date:  2016-03-03       Impact factor: 24.633

6.  Sheep cloned by nuclear transfer from a cultured cell line.

Authors:  K H Campbell; J McWhir; W A Ritchie; I Wilmut
Journal:  Nature       Date:  1996-03-07       Impact factor: 49.962

7.  SUMO2 is essential while SUMO3 is dispensable for mouse embryonic development.

Authors:  Liangli Wang; Carolien Wansleeben; Shengli Zhao; Pei Miao; Wulf Paschen; Wei Yang
Journal:  EMBO Rep       Date:  2014-06-02       Impact factor: 8.807

8.  A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity.

Authors:  Michelle Percharde; Chih-Jen Lin; Yafei Yin; Juan Guan; Gabriel A Peixoto; Aydan Bulut-Karslioglu; Steffen Biechele; Bo Huang; Xiaohua Shen; Miguel Ramalho-Santos
Journal:  Cell       Date:  2018-06-21       Impact factor: 41.582

9.  CFIm25 links alternative polyadenylation to glioblastoma tumour suppression.

Authors:  Chioniso P Masamha; Zheng Xia; Jingxuan Yang; Todd R Albrecht; Min Li; Ann-Bin Shyu; Wei Li; Eric J Wagner
Journal:  Nature       Date:  2014-05-11       Impact factor: 49.962

10.  Derivation of pluripotent epiblast stem cells from mammalian embryos.

Authors:  I Gabrielle M Brons; Lucy E Smithers; Matthew W B Trotter; Peter Rugg-Gunn; Bowen Sun; Susana M Chuva de Sousa Lopes; Sarah K Howlett; Amanda Clarkson; Lars Ahrlund-Richter; Roger A Pedersen; Ludovic Vallier
Journal:  Nature       Date:  2007-06-27       Impact factor: 49.962

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  9 in total

Review 1.  Calcium regulation of stem cells.

Authors:  Hans-Willem Snoeck
Journal:  EMBO Rep       Date:  2020-05-17       Impact factor: 8.807

2.  TFEB regulates pluripotency transcriptional network in mouse embryonic stem cells independent of autophagy-lysosomal biogenesis.

Authors:  Anderson Tan; Renuka Prasad; Eek-Hoon Jho
Journal:  Cell Death Dis       Date:  2021-04-01       Impact factor: 8.469

3.  CTCF is a barrier for 2C-like reprogramming.

Authors:  Teresa Olbrich; Maria Vega-Sendino; Desiree Tillo; Wei Wu; Nicholas Zolnerowich; Raphael Pavani; Andy D Tran; Catherine N Domingo; Mariajose Franco; Marta Markiewicz-Potoczny; Gianluca Pegoraro; Peter C FitzGerald; Michael J Kruhlak; Eros Lazzerini-Denchi; Elphege P Nora; André Nussenzweig; Sergio Ruiz
Journal:  Nat Commun       Date:  2021-08-11       Impact factor: 14.919

Review 4.  Induced Neurons From Germ Cells in Caenorhabditis elegans.

Authors:  Iris Marchal; Baris Tursun
Journal:  Front Neurosci       Date:  2021-12-03       Impact factor: 4.677

5.  The histone chaperone FACT facilitates heterochromatin spreading by regulating histone turnover and H3K9 methylation states.

Authors:  Magdalena Murawska; R A Greenstein; Tamas Schauer; Karl C F Olsen; Henry Ng; Andreas G Ladurner; Bassem Al-Sady; Sigurd Braun
Journal:  Cell Rep       Date:  2021-11-02       Impact factor: 9.995

6.  ATP-binding cassette protein ABCF1 couples transcription and genome surveillance in embryonic stem cells through low-complexity domain.

Authors:  Eun-Bee Choi; Munender Vodnala; Madeleine Zerbato; Jianing Wang; Jaclyn J Ho; Carla Inouye; Lai Ding; Yick W Fong
Journal:  Sci Adv       Date:  2021-10-29       Impact factor: 14.136

Review 7.  Induced pluripotent stem cell-based disease modeling and prospective immune therapy for coronavirus disease 2019.

Authors:  Koushik Chakrabarty; Rohit Shetty; Shubham Argulwar; Debashish Das; Arkasubhra Ghosh
Journal:  Cytotherapy       Date:  2021-09-14       Impact factor: 5.414

Review 8.  Emerging Roles for Chromo Domain Proteins in Genome Organization and Cell Fate in C. elegans.

Authors:  Abhimanyu DasGupta; Tammy L Lee; Chengyin Li; Arneet L Saltzman
Journal:  Front Cell Dev Biol       Date:  2020-10-23

Review 9.  Dynamic 3D Chromatin Reorganization during Establishment and Maintenance of Pluripotency.

Authors:  Bobbie Pelham-Webb; Dylan Murphy; Effie Apostolou
Journal:  Stem Cell Reports       Date:  2020-11-25       Impact factor: 7.765

  9 in total

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